Clone BS29686 Report

Search the DGRC for BS29686

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:296
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG6885-RA
Protein status:BS29686.pep: full length peptide match
Sequenced Size:1169

Clone Sequence Records

BS29686.complete Sequence

1169 bp assembled on 2012-05-25

GenBank Submission: KX801056

> BS29686.complete
GAAGTTATCAGTCGACATGGCCCGCCGAACACAATCGCGTTATATCTTTG
ACATCGAGGATAACTTCCGTGTGTTTCGCCACCAGTTTTTCGTCAACGGT
GCAAGGAGAGCGGATTGCACAACCTGTGAAAGTCGAGTGCCAGTCAGCGA
ACCATACCATCATCATTGGCGAAATGATATCGAGAACAATAGAAGCCATT
GCATTCAAATTGGTTCTGATGAAAAGGATATCCTGAAGAGGATCGAGGAC
CAGGCCATCGAAGAGTTTATCTTGTGTGATGGAAGCATTGCGGCCAGGAC
CAACGACTTTCTTCTGGATGCTGGGATGGATGCAGTTCCGCAACTGCTGC
GATTTTTAAGTTTTGGTACAGAAAAATTGGAGACCACAGTTGGATTTTAC
GTGGATGTGAAAAAGGAGCGAATGTACTACGAAAGCAGTCCGTTAAATAT
CGAAAACCATTTCGATATTGGTGAGGCGGTGGACATGATATTCTCCATGC
TGCTGGAGAAGATCAGCAACTACGTGCTGCTCCATCAGAAGGTTCCACTG
GAGGCGTGTGTCATCAGAAGGATGAAGGTGACGGTCAAGAGATTTTGCGT
CTCGCCTAAGAGCAATTCTCTTAAACTTCCTTTGCAGTACCGAGTAAAAA
ACGCAACAGAAGTCATTGGAAATGGAAGTAATAAGCATTCCTCCGATTTA
GCACAACTTTCTGAAACTTATATAAACCAAAAGGACCAAAATCAACACAT
TCCGGCAACTCTAAAAATAAACCTGTACACTTTTCGGGTCTGCAGCACTT
CCAAGGAATTATTTGCAGTACCATATTTGCTCCGAGGCGATGATGTCGAA
AACACACCCACCTTCATCATTCAAACGGACGTAGTTGGTGACTTTCGGGG
CTTACTTGAGATCCGAAACATAAGAAAGTTCCTGCGCGTGGATACCCACG
ATCGAGTGTTCGAGTGCCGCCAGTGTCAATCCCACTTTGTGGACCGGGTG
CACCTGGCGCTCCACAAACAAATCGCCTGTGGCAGGAACTTTATGGTGTG
GCACATGGACAAGGACGCCATCGAGTTGCACGAGAATTGCCTGCCTCTGC
CAAAGGAGTACTTCAAATATGAATGGGTCGGATTGGCAAGCAAGCGAATT
TAAAAGCTTTCTAGACCAT

BS29686.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6885-RA 1137 CG6885-PA 1..1137 17..1153 5685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6885-RA 1212 CG6885-RA 21..1159 16..1154 5695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18744508..18745646 16..1154 5695 100 Plus
Blast to na_te.dros performed on 2014-11-28 11:31:22 has no hits.

BS29686.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:40 Download gff for BS29686.complete
Subject Subject Range Query Range Percent Splice Strand
CG6885-RA 16..1150 17..1151 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:50 Download gff for BS29686.complete
Subject Subject Range Query Range Percent Splice Strand
CG6885-RA 22..1156 17..1151 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:45:42 Download gff for BS29686.complete
Subject Subject Range Query Range Percent Splice Strand
CG6885-RA 22..1156 17..1151 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:45:42 Download gff for BS29686.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18744509..18745643 17..1151 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:50 Download gff for BS29686.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18737609..18738743 17..1151 100   Plus

BS29686.pep Sequence

Translation from 16 to 1152

> BS29686.pep
MARRTQSRYIFDIEDNFRVFRHQFFVNGARRADCTTCESRVPVSEPYHHH
WRNDIENNRSHCIQIGSDEKDILKRIEDQAIEEFILCDGSIAARTNDFLL
DAGMDAVPQLLRFLSFGTEKLETTVGFYVDVKKERMYYESSPLNIENHFD
IGEAVDMIFSMLLEKISNYVLLHQKVPLEACVIRRMKVTVKRFCVSPKSN
SLKLPLQYRVKNATEVIGNGSNKHSSDLAQLSETYINQKDQNQHIPATLK
INLYTFRVCSTSKELFAVPYLLRGDDVENTPTFIIQTDVVGDFRGLLEIR
NIRKFLRVDTHDRVFECRQCQSHFVDRVHLALHKQIACGRNFMVWHMDKD
AIELHENCLPLPKEYFKYEWVGLASKRI*

BS29686.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6885-PA 378 CG6885-PA 1..378 1..378 1999 100 Plus
CG7271-PA 427 CG7271-PA 7..384 7..377 470 27.9 Plus
term-PA 428 CG4216-PA 8..385 7..377 467 27.9 Plus