BS29689.complete Sequence
1328 bp assembled on 2012-05-25
GenBank Submission: KX802812
> BS29689.complete
GAAGTTATCAGTCGACATGCCTTTAAATCTTACCCGGGAATCCGTACGAG
AACTCTGTTGCACATGCCTGCTCCAATTGGAGAAGGAACCCTTGAAGACA
GAGCTCCAATCAGATGAGATTCCAATCAGCCAGGAGCTGCAGCAGCTGCT
CAACATAAATCTATCGCAGGATGTGGAGAACCAGGACGCCGACCAGCAGT
GGCTGCCCAACGAACTGTGCCTGGAATGCCGCAGCGCCGTGCAGAATTTC
GAAAAGTTCCGCAGGAAAGCCGACGAGTGCAGGAAGCAGCTGCTGGAAAT
GCTGAAGAAAGACCCACGGGAACCCACTTTCGAAGTAGTCTACGATGGCA
GGGAGGAGGACCAAGAGTCTCTGCATGGTCTGGAACCACCAGAACCCGCT
CCCGACCCAGATCCCATCGATGAGCCGGCTATAAAAAGTGATAAATCCCC
CCGAAAGTCCTTCAGGGGATCAAGGAACACCCTGAAGTGTTCTGTGTGCC
GGCGCAGTTTTGCCCACCAGATCACCCTAGCAGCGCACATCCGTAAGGTG
CACGAGGGCAGCAAAAGGCCCTTCCAATGCGATCAGTGCGAGAAGGCCTA
CAGTTTCATGGGCGGTCTGTATACCCACATTCGAGAGGTGCATGCCCCCA
AGGAGCGACGCCATCCCTGCGACCAGCCAGGCTGCGAGAGAATCTACACC
AGCCGCATAGCCATGCAGAAGCACAAAAGGCTGAAGCACAGTCCGCGTGA
CCGCGATGCTTTGAAGAAATTCATCTGCGAGCAGTGCGGAGCCAGCTTTA
ACCAGTCGGCGAATCTTAAATACCACCTTAAGACAAAGCATCCCACGGAG
GACGAGGTGGCCGCCAGGGAGGGCGGCGCCGGAGAGCGCCATTTCTGCGA
CATTTGTCAAAAGGAGTTCCATTCACGATACACCCTCAAGTACCACACTT
TGCAGCAGCACGAGGTGCAGGAAGAGTTGCCCCACGAATGCCAGGTCTGT
GGACGCCGGATGGCCAAGAAGTTCATGCTGCTGCAGCACATGCTGATGCA
CTCGAACGACAAGTTGCCCTGCGAGCACTGCGGCAGAAGATTTGCCAGGC
GATTCGAGCTCGAAGCCCATGTGAGAGCAGTCCACTTAAAGCTGAAACCC
TTTCCCTGTCACCACTGTCCGGAGAGCTTTGCTTCTAGGAAAACCCTGCG
GCACCATGAGTACATACACACGGGTGAGAAGCCCTACATTTGCGACACCT
GTGGACAGGCCTTCCGGCAGCAGACGTGTCTTAAAAACCACCGGAAGGTG
CACGAGAAGTAGAAGCTTTCTAGACCAT
BS29689.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:31:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3032-RB | 1296 | CG3032-PB | 1..1296 | 17..1312 | 6465 | 99.9 | Plus |
| CG3032-RA | 1296 | CG3032-PA | 1..1296 | 17..1312 | 6465 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:31:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3032-RB | 1643 | CG3032-RB | 299..1594 | 17..1312 | 6465 | 99.9 | Plus |
| CG3032-RA | 1424 | CG3032-RA | 80..1375 | 17..1312 | 6465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7012288..7013583 | 1312..17 | 6465 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:31:26 has no hits.
BS29689.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:40 Download gff for
BS29689.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3032-RA | 80..1375 | 17..1312 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:52 Download gff for
BS29689.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3032-RA | 80..1375 | 17..1312 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:45:43 Download gff for
BS29689.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3032-RA | 80..1375 | 17..1312 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:45:43 Download gff for
BS29689.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7012288..7013583 | 17..1312 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:52 Download gff for
BS29689.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6906321..6907616 | 17..1312 | 99 | | Minus |
BS29689.pep Sequence
Translation from 16 to 1311
> BS29689.pep
MPLNLTRESVRELCCTCLLQLEKEPLKTELQSDEIPISQELQQLLNINLS
QDVENQDADQQWLPNELCLECRSAVQNFEKFRRKADECRKQLLEMLKKDP
REPTFEVVYDGREEDQESLHGLEPPEPAPDPDPIDEPAIKSDKSPRKSFR
GSRNTLKCSVCRRSFAHQITLAAHIRKVHEGSKRPFQCDQCEKAYSFMGG
LYTHIREVHAPKERRHPCDQPGCERIYTSRIAMQKHKRLKHSPRDRDALK
KFICEQCGASFNQSANLKYHLKTKHPTEDEVAAREGGAGERHFCDICQKE
FHSRYTLKYHTLQQHEVQEELPHECQVCGRRMAKKFMLLQHMLMHSNDKL
PCEHCGRRFARRFELEAHVRAVHLKLKPFPCHHCPESFASRKTLRHHEYI
HTGEKPYICDTCGQAFRQQTCLKNHRKVHEK*
BS29689.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3032-PB | 431 | CG3032-PB | 1..431 | 1..431 | 2366 | 100 | Plus |
| CG3032-PA | 431 | CG3032-PA | 1..431 | 1..431 | 2366 | 100 | Plus |
| CG7386-PA | 662 | CG7386-PA | 6..458 | 9..431 | 392 | 25.9 | Plus |
| CG12299-PA | 736 | CG12299-PA | 188..502 | 99..430 | 361 | 30.2 | Plus |
| CG11247-PC | 522 | CG11247-PC | 105..376 | 140..431 | 354 | 29.7 | Plus |
| CG7386-PA | 662 | CG7386-PA | 289..613 | 153..431 | 245 | 24.7 | Plus |
| CG12299-PA | 736 | CG12299-PA | 283..551 | 157..376 | 188 | 23.9 | Plus |
