BS29707.complete Sequence
875 bp assembled on 2012-07-26
GenBank Submission: KX804526
> BS29707.complete
GAAGTTATCAGTCGACATGAAATACACCGCCCTTTGGCGCTCGGTGGGCG
CCATGAGCTGCGGATCCCTGGTCACCTACTTTGCCATCCGGCTGTTCGAT
GGCCTGGAACCCTCCATGTTATCAGGTGGAGCACAAGGGGGTAAGGGGCG
GGCGATTGAACCTTTGGCCAGTGGCGCCTGGCGGCACCATTGGGACTTGG
ACAAGCCGCAGCTGCAAAAGGTGGCAAATGGCGAGGAGTCCTCCGCCCTG
CGACACATTATCCTGGTGAGACATGGCGAGTACACGAGGACCCCGAATGG
AAGCCACCTCACGGAACTGGGCCGTCGGCAGGCGGAACGGACGGGGCAAA
GGTTGCGGGAAATGGGCTTGTCCTGGGACCACGTGGTGGCCTCTACAATG
CCGCGTGCCGAGGAGACGGCCATGATCATCCTGAAGCAGCTGAACCTCGA
TCCCCTGAAGATGAAGCGCTGCACTTTGCTGCCGGAGGGCACTCCGTACC
CAGGAGATCCCCCCTCCAAGAGGAGTGCCCGCAGCCTGGACCTGGCCTAT
CAGAGGGATGGTCCGCGGATCGAGGCCGCCTTTAGGCGCTACTTCTTCAG
GGCCAGTCCGGAGCAGGAGCACGACTCGTACCTGCTCATCGTGGGCCACT
CGAATGTGATCCGTTACCTGATTCTGCGGGCCCTGCAGCTTCCTCCGGCC
GCCTGGACGCGCCTCAACCTGAACCACGGCTCCATCACCTGGCTGACTGT
GTGGCCGTCTGGCTACGTTACCTTGCGCTGCTTGGGGGACTCCGGCTTCA
TGCCGGTGACCGAGATCACCCATCGAAGGCCGTCACCGGCGAAATCCGGC
AGTAACTAGAAGCTTTCTAGACCAT
BS29707.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgam5-2-RA | 843 | CG15874-PA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:46:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgam5-2-RA | 1390 | CG15874-RA | 37..880 | 16..859 | 4220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24431854..24432697 | 859..16 | 4220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:46:12 has no hits.
BS29707.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 14:34:15 Download gff for
BS29707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15874-RA | 38..880 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:00 Download gff for
BS29707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgam5-2-RA | 38..880 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:50:55 Download gff for
BS29707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgam5-2-RA | 38..880 | 17..859 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:50:55 Download gff for
BS29707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24431854..24432696 | 17..859 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:00 Download gff for
BS29707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20319377..20320219 | 17..859 | 100 | | Minus |
BS29707.pep Sequence
Translation from 16 to 858
> BS29707.pep
MKYTALWRSVGAMSCGSLVTYFAIRLFDGLEPSMLSGGAQGGKGRAIEPL
ASGAWRHHWDLDKPQLQKVANGEESSALRHIILVRHGEYTRTPNGSHLTE
LGRRQAERTGQRLREMGLSWDHVVASTMPRAEETAMIILKQLNLDPLKMK
RCTLLPEGTPYPGDPPSKRSARSLDLAYQRDGPRIEAAFRRYFFRASPEQ
EHDSYLLIVGHSNVIRYLILRALQLPPAAWTRLNLNHGSITWLTVWPSGY
VTLRCLGDSGFMPVTEITHRRPSPAKSGSN*
BS29707.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:10:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgam5-2-PA | 280 | CG15874-PA | 1..280 | 1..280 | 1486 | 100 | Plus |
| Pgam5-PB | 288 | CG14816-PB | 2..286 | 8..277 | 576 | 44.2 | Plus |
| Pgam5-PA | 289 | CG14816-PA | 2..287 | 8..277 | 573 | 44.2 | Plus |
