BS29717.complete Sequence
995 bp assembled on 2012-05-24
GenBank Submission: KX802325
> BS29717.complete
GAAGTTATCAGTCGACATGAGTTCTTTGACTCATTCGATTTGGTTTTCTG
CGATTGCGATGGCAAGTTTGTTTCATTTGTACCTACACTATATATGGTCA
TATGTGGGTCTTGTACCGCCAGGTGTTGTTTGGTATCCACTGAGGGATTT
CATACCCGGTTCCGCCGAGGCATTGGCCCATTTGGCCCATCTTGGCAAGG
ATGTGACCTTCGTGACCAACAACAGCATCAGTTCGGTGAAGGAGCACATC
GAGAAGTTTGAGAAACAGGGCCATCTAAAGATTGATGAGCATCAAATCGT
TCATCCTGCCCAAACCATCTGCGATCACTTGAGGTCCATTAAATTCGAGG
GACTCATCTACTGCCTGGCCACGTCGCCATTTAAGGAAATCCTCGTAAAT
GCCGGATTTCGTTTGGCCCAAGAGAATGGTTCGGGAATCATCACGAGGCT
GAAGGATCTGCACGAGGCCATCTTCTCTGGCGAATCGGTGGATGCGGTCA
TCATCGACGTTGACTTCAACCTGTCGGCGGCCAAGTTGATGCGTGCCCAT
TTCCAGCTACAGAATCCGAAGTGCCTTTTCCTCGCCGGAGCTGCCGATGC
TTTGATTCCATTTGGCAAGGGTGAAATCATAGGACCTGGAGCCTTTATCG
ACGTGGTGACCCAGGCCGTTGGCCGTCAGCCCATAACCTTGGGCAAACCG
GGCGAGGATCTGCGCAAGCTTCTACTGGAACGCCATCGGGAAATTCCGCC
CAGCCGCGTGCTCTTCGTGGGCGATAGCCTGGCCAGCGATATTGGATTCG
CTCGCGCCAGTGGCTACCAGACGCTCCTCGTCCTTACCGGCGGCACAAAG
CTGGAGGATGTCCAGCGACTGCCGATTGACCATTCCCAGATGCCCGACTA
TCTGGCCGATTGCCTGGGCCAGATAGCAATCAATAATAATCCGGCATCGA
GTAACTCTGACTCGGCGCATTCGGTGTGAAAGCTTTCTAGACCAT
BS29717.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10352-RB | 948 | CG10352-PB | 91..948 | 122..979 | 4290 | 100 | Plus |
| CG10352-RB | 948 | CG10352-PB | 47..92 | 17..62 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:22:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10352-RB | 1491 | CG10352-RB | 357..1214 | 122..979 | 4290 | 100 | Plus |
| CG10352-RB | 1491 | CG10352-RB | 313..358 | 17..62 | 230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:22:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11875583..11875931 | 979..631 | 1745 | 100 | Minus |
| X | 23542271 | X | 11876449..11876721 | 289..17 | 1365 | 100 | Minus |
| X | 23542271 | X | 11875991..11876201 | 633..423 | 1055 | 100 | Minus |
| X | 23542271 | X | 11876256..11876392 | 424..288 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:22:42 has no hits.
BS29717.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:06 Download gff for
BS29717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10352-RA | 101..1062 | 17..978 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:18 Download gff for
BS29717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10352-RB | 357..1213 | 122..978 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:41:37 Download gff for
BS29717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10352-RB | 357..1213 | 122..978 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:41:37 Download gff for
BS29717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11876449..11876721 | 17..289 | 100 | | Minus |
| X | 11875584..11875929 | 633..978 | 100 | <- | Minus |
| X | 11875992..11876199 | 425..632 | 100 | <- | Minus |
| X | 11876256..11876390 | 290..424 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:18 Download gff for
BS29717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11769617..11769962 | 633..978 | 100 | <- | Minus |
| arm_X | 11770025..11770232 | 425..632 | 100 | <- | Minus |
| arm_X | 11770289..11770423 | 290..424 | 100 | <- | Minus |
| arm_X | 11770482..11770754 | 17..289 | 100 | | Minus |
BS29717.pep Sequence
Translation from 16 to 978
> BS29717.pep
MSSLTHSIWFSAIAMASLFHLYLHYIWSYVGLVPPGVVWYPLRDFIPGSA
EALAHLAHLGKDVTFVTNNSISSVKEHIEKFEKQGHLKIDEHQIVHPAQT
ICDHLRSIKFEGLIYCLATSPFKEILVNAGFRLAQENGSGIITRLKDLHE
AIFSGESVDAVIIDVDFNLSAAKLMRAHFQLQNPKCLFLAGAADALIPFG
KGEIIGPGAFIDVVTQAVGRQPITLGKPGEDLRKLLLERHREIPPSRVLF
VGDSLASDIGFARASGYQTLLVLTGGTKLEDVQRLPIDHSQMPDYLADCL
GQIAINNNPASSNSDSAHSV*
BS29717.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:36:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10352-PB | 315 | CG10352-PB | 31..315 | 36..320 | 1464 | 100 | Plus |
| CG15739-PB | 308 | CG15739-PB | 31..297 | 36..304 | 590 | 45.6 | Plus |
| CG15739-PA | 308 | CG15739-PA | 31..297 | 36..304 | 590 | 45.6 | Plus |
| CG2680-PB | 305 | CG2680-PB | 31..293 | 36..300 | 315 | 34.2 | Plus |
| CG5567-PA | 330 | CG5567-PA | 48..318 | 36..303 | 258 | 27.5 | Plus |
