Clone BS29727 Report

Search the DGRC for BS29727

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:297
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG32537-RA
Protein status:BS29727.pep: full length peptide match
Sequenced Size:1076

Clone Sequence Records

BS29727.complete Sequence

1076 bp assembled on 2012-05-24

GenBank Submission: KX805006

> BS29727.complete
GAAGTTATCAGTCGACATGCTGTTGCCGGAGCTGCTGCTACTCGGCTTGG
CCGTCTCCCTGGCGGACAGCTACGACCGAAGCGTCAACTACTGGGAGGCC
TTTGCGCCCGGCAAGCTGCTCCAGCGCCTGGACGCTCTCACCGTCACGGA
TGTGGACCAATCGAAGGTGGTCAAACTGCCGCAGTTGATGCAGCCCATCC
TGCCAGCCAACGAAGCGCAGGCCAAGGTGGATGAGGACGTGGACGTGGAT
GTTGAGACGGATGCAGAGGCGGCGGCCGTTGACGATGTGGACAGCCTTAG
TGCGGAGACCAGCCACGAGGGCTACTCCGGCGAGGACAACTACGAGCGCA
ACTACGAGCAGTTCGTCAAGGAGTACTTCGATCGGGCTGCCGACGACGAT
GACCACGACGAAGGCGAAGGCCTGGTGGAGGAGGAGGAGGAGGAGACCCA
GGCGGAGGCCACCAATGTCAGGGATCAGCGCTGCCGGCAGGTCAAACGGA
AGGATGGCCAGCTGTGCGAGATCTGTCGCCAGTTGAAGAACAACGAGGTG
TCCGAAACGTGTAGCTACTCGCACGACGACCAACCGCAGCAGTACGCCTA
TGGCAGCGGCAGCCAGTACAAGCGTTACCGCGACGATCCCGCACAGAAGG
CGGATCAGGAGCAGGCCGAGCCGGTGGCGCCCAGCAGCCTGTGCGTGCGC
CGCCAGCAGAAGAACAGCGTCTGCTACGAGTGCAAGGACAGCAAGGGCCA
GAAGATCGAACGCTGCTACGATGTGCAGGCCCGCAAGGCCAAGACCCGAA
AGACGAAGGCCTCCTCCACCCGTCATCCGTCCAGCTCCGTTCACAAACGT
AAGCCGCGTTCCCAGCAGTCGCAGCAGTCGGAGCAGGAGCAGCGCATCTA
CAAGCGCACCATTAGCTACAGCTATGCCCAGGGCACGGATCAGCAGGGGC
CGCGGTCGGAGCAGCCGGCCGGCGGGACAACGGAGCTGCCAGTGCCACGC
CAGCGTCGCCGGCGGCTGGTGAAGATTACGCGTCGGCGCGGACCGGCTAA
AGTGCAATAAAAGCTTTCTAGACCAT

BS29727.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG32537-RB 1044 CG32537-PB 1..1044 17..1060 5190 99.8 Plus
CG32537-RA 1044 CG32537-PA 1..1044 17..1060 5190 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG32537-RB 1817 CG32537-RB 338..1383 17..1062 5200 99.8 Plus
CG32537-RA 2442 CG32537-RA 963..2008 17..1062 5200 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19273783..19274828 1062..17 5200 99.8 Minus
Blast to na_te.dros performed on 2014-11-28 11:23:17 has no hits.

BS29727.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:11 Download gff for BS29727.complete
Subject Subject Range Query Range Percent Splice Strand
CG32537-RA 963..2004 17..1058 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:34 Download gff for BS29727.complete
Subject Subject Range Query Range Percent Splice Strand
CG32537-RA 963..2004 17..1058 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:41:50 Download gff for BS29727.complete
Subject Subject Range Query Range Percent Splice Strand
CG32537-RA 963..2004 17..1058 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:41:50 Download gff for BS29727.complete
Subject Subject Range Query Range Percent Splice Strand
X 19273787..19274828 17..1058 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:34 Download gff for BS29727.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19167820..19168861 17..1058 99   Minus

BS29727.pep Sequence

Translation from 16 to 1059

> BS29727.pep
MLLPELLLLGLAVSLADSYDRSVNYWEAFAPGKLLQRLDALTVTDVDQSK
VVKLPQLMQPILPANEAQAKVDEDVDVDVETDAEAAAVDDVDSLSAETSH
EGYSGEDNYERNYEQFVKEYFDRAADDDDHDEGEGLVEEEEEETQAEATN
VRDQRCRQVKRKDGQLCEICRQLKNNEVSETCSYSHDDQPQQYAYGSGSQ
YKRYRDDPAQKADQEQAEPVAPSSLCVRRQQKNSVCYECKDSKGQKIERC
YDVQARKAKTRKTKASSTRHPSSSVHKRKPRSQQSQQSEQEQRIYKRTIS
YSYAQGTDQQGPRSEQPAGGTTELPVPRQRRRRLVKITRRRGPAKVQ*

BS29727.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG32537-PB 347 CG32537-PB 1..347 1..347 1799 100 Plus
CG32537-PA 347 CG32537-PA 1..347 1..347 1799 100 Plus