Clone BS29729 Report

Search the DGRC for BS29729

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:297
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG4520-RA
Protein status:BS29729.pep: full length peptide match
Sequenced Size:995

Clone Sequence Records

BS29729.complete Sequence

995 bp assembled on 2012-05-24

GenBank Submission: KX803983

> BS29729.complete
GAAGTTATCAGTCGACATGTCATGCAAGAATTGCCCTCCCTACAAGAACT
CCGAATTGGGCATCTTCTTTCCGGATTGCTTCGAACGCGTCAGCGGTCAT
TGCAACAAGAAGAATCCCGGCAATGTCCAGAATCTCCACATCCTGGCCCA
TCGGGTGATGCCCAAATTCTACGATGGCATCGAACTGGACTACCTCCACC
GCCTGGCACCCAACAAATATATCACGGCCGCCTGGGTTCTCAGTCACATC
AGGCCATCGGGTTTTCGCTTCGGCGGACTATACACGTTTCGGGTTCAAGA
CGATACTATGTACACCCCAACCATTATGGGCGACATACATCCCACTTCAC
TCGCTGCCAACCTGAACATACTGTACTATCCTTTTCAATCCCTTCGCATG
GAGGCCGTGCTGCAGAAGGCCAGGGAGGCCGCGGTGGAGAGCCAGTATAC
GATCGAGTGGACGAGGCCATGCGACACGTGGACCGCCAACTTTTACAATG
TGCGGAATGAAAGTGGACGTTGCACAATGTCCGTGATGAGATCGGTATCC
GCACACTGGGCCCTCGGCGGGGAACTTCTACTGGAGTGGAACGATCCCCA
GAAACTGACTCCGGATCTGGCGCTCGCAGCACGTTACTCCCATTATAACT
ATTCCTTGGCTGCCACCGCATCGAGGCAGGGATTGGATGTCACCTACTGG
CAGCGCATTCATCCCCATATCCAGATGGCCAATCTCTTGGCGTGGAATCG
TAATACCCGAAAGACCATTGCCACGATATGCTATCAATGGAACTTCTGGA
ACTCAGCCGTCCATGGGATGTTCGATTCGGATGCCTCCGTGGGCTTCATG
TGGACAAAATACCTGACGCATTTGCCACTGCAAATGGGTTTCAGTGTAGT
GATGAATCTGCCCACAGATCGATTTGCTTTCGGCATGCGTTTTGTTTTGG
ACCCAAGTGGATTGAGACGTGGCGAGTAAAAGCTTTCTAGACCAT

BS29729.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4520-RB 963 CG4520-PB 1..963 17..979 4815 100 Plus
CG4520-RA 963 CG4520-PA 1..963 17..979 4815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4520-RB 1499 CG4520-RB 130..1097 12..979 4825 99.9 Plus
CG4520-RA 1171 CG4520-RA 130..1097 12..979 4825 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15745171..15745494 310..633 1620 100 Plus
3R 32079331 3R 15744783..15745081 12..310 1480 99.7 Plus
3R 32079331 3R 15745551..15745776 633..858 1130 100 Plus
3R 32079331 3R 15745829..15745949 859..979 605 100 Plus
Blast to na_te.dros performed on 2014-11-28 11:23:25 has no hits.

BS29729.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:13 Download gff for BS29729.complete
Subject Subject Range Query Range Percent Splice Strand
CG4520-RA 135..1095 17..977 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:38 Download gff for BS29729.complete
Subject Subject Range Query Range Percent Splice Strand
CG4520-RA 135..1095 17..977 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:41:54 Download gff for BS29729.complete
Subject Subject Range Query Range Percent Splice Strand
CG4520-RA 135..1095 17..977 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:41:54 Download gff for BS29729.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15745829..15745947 859..977 100   Plus
3R 15744788..15745081 17..310 100 -> Plus
3R 15745172..15745494 311..633 100 -> Plus
3R 15745552..15745776 634..858 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:38 Download gff for BS29729.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11571551..11571669 859..977 100   Plus
arm_3R 11570894..11571216 311..633 100 -> Plus
arm_3R 11570510..11570803 17..310 100 -> Plus
arm_3R 11571274..11571498 634..858 100 -> Plus

BS29729.pep Sequence

Translation from 16 to 978

> BS29729.pep
MSCKNCPPYKNSELGIFFPDCFERVSGHCNKKNPGNVQNLHILAHRVMPK
FYDGIELDYLHRLAPNKYITAAWVLSHIRPSGFRFGGLYTFRVQDDTMYT
PTIMGDIHPTSLAANLNILYYPFQSLRMEAVLQKAREAAVESQYTIEWTR
PCDTWTANFYNVRNESGRCTMSVMRSVSAHWALGGELLLEWNDPQKLTPD
LALAARYSHYNYSLAATASRQGLDVTYWQRIHPHIQMANLLAWNRNTRKT
IATICYQWNFWNSAVHGMFDSDASVGFMWTKYLTHLPLQMGFSVVMNLPT
DRFAFGMRFVLDPSGLRRGE*

BS29729.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4520-PB 320 CG4520-PB 1..320 1..320 1754 100 Plus
CG4520-PA 320 CG4520-PA 1..320 1..320 1754 100 Plus
Tom40-PC 344 CG12157-PC 58..338 32..306 204 24.8 Plus
Tom40-PB 344 CG12157-PB 58..338 32..306 204 24.8 Plus
Tom40-PA 344 CG12157-PA 58..338 32..306 204 24.8 Plus