BS29729.complete Sequence
995 bp assembled on 2012-05-24
GenBank Submission: KX803983
> BS29729.complete
GAAGTTATCAGTCGACATGTCATGCAAGAATTGCCCTCCCTACAAGAACT
CCGAATTGGGCATCTTCTTTCCGGATTGCTTCGAACGCGTCAGCGGTCAT
TGCAACAAGAAGAATCCCGGCAATGTCCAGAATCTCCACATCCTGGCCCA
TCGGGTGATGCCCAAATTCTACGATGGCATCGAACTGGACTACCTCCACC
GCCTGGCACCCAACAAATATATCACGGCCGCCTGGGTTCTCAGTCACATC
AGGCCATCGGGTTTTCGCTTCGGCGGACTATACACGTTTCGGGTTCAAGA
CGATACTATGTACACCCCAACCATTATGGGCGACATACATCCCACTTCAC
TCGCTGCCAACCTGAACATACTGTACTATCCTTTTCAATCCCTTCGCATG
GAGGCCGTGCTGCAGAAGGCCAGGGAGGCCGCGGTGGAGAGCCAGTATAC
GATCGAGTGGACGAGGCCATGCGACACGTGGACCGCCAACTTTTACAATG
TGCGGAATGAAAGTGGACGTTGCACAATGTCCGTGATGAGATCGGTATCC
GCACACTGGGCCCTCGGCGGGGAACTTCTACTGGAGTGGAACGATCCCCA
GAAACTGACTCCGGATCTGGCGCTCGCAGCACGTTACTCCCATTATAACT
ATTCCTTGGCTGCCACCGCATCGAGGCAGGGATTGGATGTCACCTACTGG
CAGCGCATTCATCCCCATATCCAGATGGCCAATCTCTTGGCGTGGAATCG
TAATACCCGAAAGACCATTGCCACGATATGCTATCAATGGAACTTCTGGA
ACTCAGCCGTCCATGGGATGTTCGATTCGGATGCCTCCGTGGGCTTCATG
TGGACAAAATACCTGACGCATTTGCCACTGCAAATGGGTTTCAGTGTAGT
GATGAATCTGCCCACAGATCGATTTGCTTTCGGCATGCGTTTTGTTTTGG
ACCCAAGTGGATTGAGACGTGGCGAGTAAAAGCTTTCTAGACCAT
BS29729.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:23:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4520-RB | 963 | CG4520-PB | 1..963 | 17..979 | 4815 | 100 | Plus |
CG4520-RA | 963 | CG4520-PA | 1..963 | 17..979 | 4815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4520-RB | 1499 | CG4520-RB | 130..1097 | 12..979 | 4825 | 99.9 | Plus |
CG4520-RA | 1171 | CG4520-RA | 130..1097 | 12..979 | 4825 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:23:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15745171..15745494 | 310..633 | 1620 | 100 | Plus |
3R | 32079331 | 3R | 15744783..15745081 | 12..310 | 1480 | 99.7 | Plus |
3R | 32079331 | 3R | 15745551..15745776 | 633..858 | 1130 | 100 | Plus |
3R | 32079331 | 3R | 15745829..15745949 | 859..979 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:23:25 has no hits.
BS29729.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:13 Download gff for
BS29729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4520-RA | 135..1095 | 17..977 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:38 Download gff for
BS29729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4520-RA | 135..1095 | 17..977 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:41:54 Download gff for
BS29729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4520-RA | 135..1095 | 17..977 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:41:54 Download gff for
BS29729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15745829..15745947 | 859..977 | 100 | | Plus |
3R | 15744788..15745081 | 17..310 | 100 | -> | Plus |
3R | 15745172..15745494 | 311..633 | 100 | -> | Plus |
3R | 15745552..15745776 | 634..858 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:38 Download gff for
BS29729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11571551..11571669 | 859..977 | 100 | | Plus |
arm_3R | 11570894..11571216 | 311..633 | 100 | -> | Plus |
arm_3R | 11570510..11570803 | 17..310 | 100 | -> | Plus |
arm_3R | 11571274..11571498 | 634..858 | 100 | -> | Plus |
BS29729.pep Sequence
Translation from 16 to 978
> BS29729.pep
MSCKNCPPYKNSELGIFFPDCFERVSGHCNKKNPGNVQNLHILAHRVMPK
FYDGIELDYLHRLAPNKYITAAWVLSHIRPSGFRFGGLYTFRVQDDTMYT
PTIMGDIHPTSLAANLNILYYPFQSLRMEAVLQKAREAAVESQYTIEWTR
PCDTWTANFYNVRNESGRCTMSVMRSVSAHWALGGELLLEWNDPQKLTPD
LALAARYSHYNYSLAATASRQGLDVTYWQRIHPHIQMANLLAWNRNTRKT
IATICYQWNFWNSAVHGMFDSDASVGFMWTKYLTHLPLQMGFSVVMNLPT
DRFAFGMRFVLDPSGLRRGE*
BS29729.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:36:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4520-PB | 320 | CG4520-PB | 1..320 | 1..320 | 1754 | 100 | Plus |
CG4520-PA | 320 | CG4520-PA | 1..320 | 1..320 | 1754 | 100 | Plus |
Tom40-PC | 344 | CG12157-PC | 58..338 | 32..306 | 204 | 24.8 | Plus |
Tom40-PB | 344 | CG12157-PB | 58..338 | 32..306 | 204 | 24.8 | Plus |
Tom40-PA | 344 | CG12157-PA | 58..338 | 32..306 | 204 | 24.8 | Plus |