BS29738.complete Sequence
1283 bp assembled on 2012-05-24
GenBank Submission: KX803722
> BS29738.complete
GAAGTTATCAGTCGACATGCCAGAAAACGCAGATACCGAGCAATTTAATG
CCGATGAGCTGGAGGCTCCTGCATGGCTGAATGCCCAGTTTATTACTGAC
GTTCTTAGAACCTACGAAAAGTGTCCGGAACTGGAGGTTACCGATCTTAA
AATCACTCCGGCGAGTGCCCAGGGAGATCACTACGCAAGCGTAATGTTCC
GTACTACTGCTGAGTATACCACTTCGAAAGGAAAGTTCTGTAAGCCGCTA
ATCATTAAAACGATGCCAGAACAAGAAGGACACAAGAAGGATATGCTTAG
CGACTCACATTTGTTCTCCACCGAGATTAATGCTTACACTAAGGCTCTGC
CCGAATTCGAGAGAATTCTCCGGGAGGCAGGCGACGATACAAAGCTATTT
GTGCCCTGTATCTACCACAGTCTAGAGCCTCGGCAGGTGTTAATATTCGA
GGATTTGGTGCCGCAGGGATACTTCGTGATCCGAGATCGTCCAATAAACA
TGAACGAATACAAAAATGTTTTCTCCAAACTGGCCAAATGGCATGCTGTT
AGCATGAAAGTCTTGAATGAGCAACCTGATATCTTGAAAGACTTCAAGTA
TGGGCTAATGGAAATGCCTTCTATTATGTCGGATCCAATGGTTACTACTG
GAATGGACAACTTTTTGAAAATGATGGACCAGATTCCTGAACTTACAAAG
TACAAGCCACACTTTGAGAAAATAAAAGAGAACTACATACAGCGTATGGG
TGATGTAATGCAGGAATATCGCAAGAACGTTCAATCCGATGGATACTACG
TGATGTGTCACGGAGATTTTCATGGCCGAAATATGATGTTCAATAAAAAT
GAGGAGGTCATGTTTGTAGATTTCCAAATCTGTAACCTGTGTCCCATTAC
AATCGATTTGAGTTATTCTGTGTACATGCTCATGGAGCCAGAGCAGCGAT
GGGATCTCGGAAAGGATCTTATTAACTTTTATTTTTCGGTTTTGGAGGAC
ACGTTAAAAAAAGTTGGCTACAAGGGCAAGATGCCGACCAATGATGGTCT
GTGGAAGCAAATACACCGACACAAGTTTTATGACTTCTTCCTTTTAACCA
CTTTTTCGCCAATGATTGTGGCCGTTAAAGCGAATACGTTTAAAATACAC
GAGTTAATTCAAGATCCGGAAATCAGACAAAAATCATACCTCTATGACCC
TTATGTTCAAGATGTCAAAAAGCTTTTGGGTAAATATGAGGAAATGGGAT
ACTTTAACGATCTTTGAAAGCTTTCTAGACCAT
BS29738.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:23:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11893-RA | 1251 | CG11893-PA | 1..1251 | 17..1267 | 6255 | 100 | Plus |
| CG31300-RA | 1269 | CG31300-PA | 15..722 | 31..738 | 810 | 74.3 | Plus |
| CG13658-RB | 1269 | CG13658-PB | 7..824 | 23..840 | 520 | 70.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:23:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11893-RA | 1415 | CG11893-RA | 39..1289 | 17..1267 | 6255 | 100 | Plus |
| CG31300-RA | 1474 | CG31300-RA | 86..793 | 31..738 | 810 | 74.3 | Plus |
| CG13658-RB | 1334 | CG13658-RB | 18..835 | 23..840 | 520 | 70.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:23:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25289927..25290992 | 17..1082 | 5330 | 100 | Plus |
| 3R | 32079331 | 3R | 25291055..25291240 | 1082..1267 | 930 | 100 | Plus |
| 3R | 32079331 | 3R | 25283705..25284233 | 31..559 | 755 | 76.2 | Plus |
| 3R | 32079331 | 3R | 25287491..25287958 | 23..490 | 420 | 72.6 | Plus |
| 3R | 32079331 | 3R | 25285552..25285997 | 42..487 | 400 | 72.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:23:52 has no hits.
BS29738.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:17 Download gff for
BS29738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11893-RA | 39..1288 | 17..1266 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:49 Download gff for
BS29738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11893-RA | 39..1288 | 17..1266 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:42:07 Download gff for
BS29738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11893-RA | 39..1288 | 17..1266 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:42:07 Download gff for
BS29738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25289927..25290992 | 17..1082 | 100 | -> | Plus |
| 3R | 25291056..25291239 | 1083..1266 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:49 Download gff for
BS29738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21115649..21116714 | 17..1082 | 100 | -> | Plus |
| arm_3R | 21116778..21116961 | 1083..1266 | 100 | | Plus |
BS29738.pep Sequence
Translation from 16 to 1266
> BS29738.pep
MPENADTEQFNADELEAPAWLNAQFITDVLRTYEKCPELEVTDLKITPAS
AQGDHYASVMFRTTAEYTTSKGKFCKPLIIKTMPEQEGHKKDMLSDSHLF
STEINAYTKALPEFERILREAGDDTKLFVPCIYHSLEPRQVLIFEDLVPQ
GYFVIRDRPINMNEYKNVFSKLAKWHAVSMKVLNEQPDILKDFKYGLMEM
PSIMSDPMVTTGMDNFLKMMDQIPELTKYKPHFEKIKENYIQRMGDVMQE
YRKNVQSDGYYVMCHGDFHGRNMMFNKNEEVMFVDFQICNLCPITIDLSY
SVYMLMEPEQRWDLGKDLINFYFSVLEDTLKKVGYKGKMPTNDGLWKQIH
RHKFYDFFLLTTFSPMIVAVKANTFKIHELIQDPEIRQKSYLYDPYVQDV
KKLLGKYEEMGYFNDL*
BS29738.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11893-PA | 416 | CG11893-PA | 1..416 | 1..416 | 2227 | 100 | Plus |
| CG31300-PA | 422 | CG31300-PA | 1..422 | 1..416 | 1587 | 67.8 | Plus |
| CG31104-PA | 420 | CG31104-PA | 7..420 | 9..416 | 1555 | 69.1 | Plus |
| CG13658-PB | 422 | CG13658-PB | 1..422 | 1..416 | 1500 | 64.7 | Plus |
| CG31436-PA | 420 | CG31436-PA | 1..416 | 1..411 | 1200 | 52.2 | Plus |
