BS29742.complete Sequence
1286 bp assembled on 2012-05-24
GenBank Submission: KX805235
> BS29742.complete
GAAGTTATCAGTCGACATGTCTGAGGCCACCACCAATGGACACAATGAGG
TGCCAGCCAATAATCTTCCATCTTGGCTGTCGAAAATCTCTCTGGAGAAG
GCTGTTCAGGCCCAGATCGGAGACTTTGAGAAAATCATCTCGGTAATCCC
ACAAAAGGGCAGCAGTGATGGCGATAATTATTCTACACAGTTCCTTCGTT
TGCTGGTGGAAGTGGAACTGATTGACCACAGCACCAAGGATCTTTCCTTC
GTTCTGAAGGCACAGCACAGCAACGAAATGATGGCCGCCATATTGGCCAA
GTTGAAGCTCTTCCAAAAGGAGGAACAGATGTACCATAGCATTCTGCCCA
AATTCGAGAAGCTTTACGCGGATGCCGGCAAACCCATTCAGTTCGCGCCC
AAAGCCTTCAAGTTCGATCGTGACCTCGGAGTGGACTACATTCTGCTTGA
GGACCTACATCGCAAGAACTTCAAAAACGCCAATCGCCTGGCCGGTCTGG
ATCTCGATCACATGCATAAGGTTCTCGAGAAACTGGCCGCCTTCCATGCG
GCATCCGCCTGCTACGTGGAGCACCACGGTCTCTTTGGCGAGGAGTTCAC
CGTTGGCGTTTTCAGCGAGTCCAATCGCCAGCTTCTTCAGGAGTTCAATG
CATCTGGTGCATTTCTGGCTCAGCTCAAGAAGTGGAAGAATGCGCAGAAA
ATTTATGAAAAGCTGGCTGACAGCGATGACTACTTGGTGGATCGTCTGCT
GCAGGATCAGCAATACAATACCAGAGAATTCAACGTGCTCAACCATGGAG
ACTGCTGGGCCAATAATGTGATGTACCAACATGATGCATTTGGAACTATT
AAGGAGACCCTTTTCGTTGACTTTCAAGTGGGAAAATACGGAAGTCCGGC
CAATGATCTGTACTACTTAATATTGTCATCGGCTGCTCCAGAGCTGAAGA
CTGCCAAGTTTGACTACTTGGTGCGCTACTATTTTGATAATCTTATTGAG
AATCTAAAGCTTCTGCAATACCACCGACCACTGCCCAAGTTGAAGAACCT
GCATGCTTCCCTTTTTCGCAACGGTTTGGCTGCTTATATGGTGGTCTCCA
AGGTGTTGCCCGTCGTCATGCTGGACAAGACAGCCGATGCTAATCTGGAA
AGCTATATAAGTGACGAGTCCAAAATGAAGAACGCTATGTTCACCAACCC
GAAGTATGTCCAGGTGATGACGGAGGTGCTGCCATGGTTGGACAACCGCG
GCCTGCTCGACTTGAAGTGAAAGCTTTCTAGACCAT
BS29742.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:24:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31087-RB | 1254 | CG31087-PB | 1..1254 | 17..1270 | 6270 | 100 | Plus |
| CG31087-RA | 1254 | CG31087-PA | 1..1254 | 17..1270 | 6270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31087-RB | 1458 | CG31087-RB | 93..1347 | 16..1270 | 6275 | 100 | Plus |
| CG31087-RA | 1445 | CG31087-RA | 80..1334 | 16..1270 | 6275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:24:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25311883..25312375 | 716..224 | 2465 | 100 | Minus |
| 3R | 32079331 | 3R | 25312446..25312654 | 224..16 | 1045 | 100 | Minus |
| 3R | 32079331 | 3R | 25311138..25311326 | 1270..1082 | 945 | 100 | Minus |
| 3R | 32079331 | 3R | 25311386..25311570 | 1082..898 | 925 | 100 | Minus |
| 3R | 32079331 | 3R | 25311639..25311823 | 899..715 | 925 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:24:04 has no hits.
BS29742.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:20 Download gff for
BS29742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31087-RA | 81..1333 | 17..1269 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:56 Download gff for
BS29742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31087-RA | 81..1333 | 17..1269 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:42:13 Download gff for
BS29742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31087-RA | 81..1333 | 17..1269 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:42:13 Download gff for
BS29742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25312446..25312653 | 17..224 | 100 | | Minus |
| 3R | 25311139..25311325 | 1083..1269 | 100 | <- | Minus |
| 3R | 25311386..25311569 | 899..1082 | 100 | <- | Minus |
| 3R | 25311640..25311822 | 716..898 | 100 | <- | Minus |
| 3R | 25311884..25312374 | 225..715 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:56 Download gff for
BS29742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21136861..21137047 | 1083..1269 | 100 | <- | Minus |
| arm_3R | 21137108..21137291 | 899..1082 | 100 | <- | Minus |
| arm_3R | 21137362..21137544 | 716..898 | 100 | <- | Minus |
| arm_3R | 21137606..21138096 | 225..715 | 100 | <- | Minus |
| arm_3R | 21138168..21138375 | 17..224 | 100 | | Minus |
BS29742.pep Sequence
Translation from 16 to 1269
> BS29742.pep
MSEATTNGHNEVPANNLPSWLSKISLEKAVQAQIGDFEKIISVIPQKGSS
DGDNYSTQFLRLLVEVELIDHSTKDLSFVLKAQHSNEMMAAILAKLKLFQ
KEEQMYHSILPKFEKLYADAGKPIQFAPKAFKFDRDLGVDYILLEDLHRK
NFKNANRLAGLDLDHMHKVLEKLAAFHAASACYVEHHGLFGEEFTVGVFS
ESNRQLLQEFNASGAFLAQLKKWKNAQKIYEKLADSDDYLVDRLLQDQQY
NTREFNVLNHGDCWANNVMYQHDAFGTIKETLFVDFQVGKYGSPANDLYY
LILSSAAPELKTAKFDYLVRYYFDNLIENLKLLQYHRPLPKLKNLHASLF
RNGLAAYMVVSKVLPVVMLDKTADANLESYISDESKMKNAMFTNPKYVQV
MTEVLPWLDNRGLLDLK*
BS29742.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:36:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31087-PB | 417 | CG31087-PB | 1..417 | 1..417 | 2160 | 100 | Plus |
| CG31087-PA | 417 | CG31087-PA | 1..417 | 1..417 | 2160 | 100 | Plus |
| CG31099-PA | 400 | CG31099-PA | 6..400 | 17..415 | 923 | 44.9 | Plus |
| CHKov1-PE | 410 | CG10618-PE | 3..408 | 14..415 | 802 | 39.8 | Plus |
| CG10562-PA | 405 | CG10562-PA | 3..405 | 14..416 | 769 | 38.3 | Plus |
