BS29745.complete Sequence
1472 bp assembled on 2012-05-24
GenBank Submission: KX801414
> BS29745.complete
GAAGTTATCAGTCGACATGAGTGCCTGTTCAGAACCAACTACTTTTTCAA
AAACCAAGGAGACGGCCAAGATCGTCATAATCGGAGCTGGTGCTTCGGGA
GTAGCAGCAGCTACTAAACTTTTGGAACAAGGATTCAAAAATGTCCTGCT
CTTCGAGGCGGAAGACCGGATTGGAGGTCGCATCAACACGATCCTGTTTG
CCAACAGCTTAATCGATCTGGGTGCTCAATGGTGCCACGGTGAAGAAGGA
AATGTTGTCTATGAAAAAGTTAAGGACCTGGATGTCCTCGACAGGACCGG
CGACTATGTCGTTCACTTTATTCGCTCTAACAAGGAAATTCTCACTGACG
TTCATAACAAGGCTCTTACGGAATTGACGAACGCATTTGAGGTGCCTGGC
GAACATGAGGGTTCCGTAGGTGATGCCTTTAATGCCTATTGGAAGGAGAA
TATCCATCAGTTGGTTCCGAACGATAAGACCATTGCCAAGGAGGCCCAAG
ACTGCCTGAAAAAGGTAATTTGCAGCATGGATGCTTGCGATAATTTGTCC
GAGCTTTCTTACCGAAATTTCCGGAACTTTGCTATTGCCGGTGGGGATCA
AAATCTCAGCTGGCGGCAAAAGGGCTATTGGAAATTTTTGAGTGTCCTGC
TAAATTCTAGCGATAATCAGCCCGGTGACCAGGGAATTCTTAAAGGACAT
GTGCATCTCAACAAACGAATTGCTAAGATCAATTGGGAAGGAGATGGTGA
ATTGACTCTCCGCTGCTGGAACGGCCAATTTGTTTCAGCGGATCATGTGA
TTTGTACTGTCTCATTGGGGGTTCTCAGGGAAAAGCACCATAAGCTCTTT
GTACCAGCTCTGCCAGCCTCCAAGATCAGGTCGATAGAGGGTCTCAAACT
GGGGACAGTGAACAAGTTCTATTTGGAGTTTGAGGAGCAGCCAGTGCCGG
AAAACATTAGAGAAATGGCGTTCCTTTGGCTTGAGGAAGATCTAAAGGAG
CTACGAAGTGGCAAATACTTTTGGCTGGAGAGTGTTTGTTATTTTCATCG
TGTGGATTGTCAACCGCGTTTGTTACAGGGATGGATCATTGGTGCCCACT
CGCGGTACGTTGAAACCATCAGCGAGGAGCAGGTCCTCGAGGGAATTATG
TGGATGTTTAGGAAGTTTCTTAAGTTTTCCGTACCCTACCCAAAAAACTT
TTTGCGCTCTCAATGGCAATCTAATCCGAACTTCCGCGGCTCTTATAGTT
ACTACTCCACTTACGCTGATGAACTCCGTACGGGACGCACGGATTTGGCA
TCACCTTTGGTGGATGTAACTGGAAGACCGAGGATACAATTCGCCGGAGA
GGCTTCGAGCCGGAACCACTTCTCTACGGTCCACGGAGCCATTGAGTCGG
GATGGCGCGAGGCAGAGCGACTCAATGAATTCTACGAAGGACGAGCTGCA
AACTAAAAGCTTTCTAGACCAT
BS29745.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:24:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6034-RA | 1440 | CG6034-PA | 1..1440 | 17..1456 | 7200 | 100 | Plus |
| CG7460-RC | 1461 | CG7460-PC | 700..936 | 698..934 | 285 | 74.7 | Plus |
| CG7460-RB | 1461 | CG7460-PB | 700..936 | 698..934 | 285 | 74.7 | Plus |
| CG7460-RC | 1461 | CG7460-PC | 120..261 | 139..280 | 215 | 76.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6034-RA | 1688 | CG6034-RA | 48..1488 | 16..1456 | 7205 | 100 | Plus |
| CG7460-RC | 1814 | CG7460-RC | 798..1034 | 698..934 | 285 | 74.7 | Plus |
| CG7460-RB | 2001 | CG7460-RB | 985..1221 | 698..934 | 285 | 74.7 | Plus |
| CG7460-RC | 1814 | CG7460-RC | 218..359 | 139..280 | 215 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:24:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17745373..17746813 | 1456..16 | 7205 | 100 | Minus |
| 3L | 28110227 | 3L | 17741524..17741760 | 698..934 | 285 | 74.7 | Plus |
| 3L | 28110227 | 3L | 17740944..17741085 | 139..280 | 215 | 76.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:24:13 has no hits.
BS29745.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:21 Download gff for
BS29745.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6034-RA | 49..1486 | 17..1454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:00 Download gff for
BS29745.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6034-RA | 49..1486 | 17..1454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:42:16 Download gff for
BS29745.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6034-RA | 49..1486 | 17..1454 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:42:16 Download gff for
BS29745.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17745375..17746812 | 17..1454 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:00 Download gff for
BS29745.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17738475..17739912 | 17..1454 | 100 | | Minus |
BS29745.pep Sequence
Translation from 16 to 1455
> BS29745.pep
MSACSEPTTFSKTKETAKIVIIGAGASGVAAATKLLEQGFKNVLLFEAED
RIGGRINTILFANSLIDLGAQWCHGEEGNVVYEKVKDLDVLDRTGDYVVH
FIRSNKEILTDVHNKALTELTNAFEVPGEHEGSVGDAFNAYWKENIHQLV
PNDKTIAKEAQDCLKKVICSMDACDNLSELSYRNFRNFAIAGGDQNLSWR
QKGYWKFLSVLLNSSDNQPGDQGILKGHVHLNKRIAKINWEGDGELTLRC
WNGQFVSADHVICTVSLGVLREKHHKLFVPALPASKIRSIEGLKLGTVNK
FYLEFEEQPVPENIREMAFLWLEEDLKELRSGKYFWLESVCYFHRVDCQP
RLLQGWIIGAHSRYVETISEEQVLEGIMWMFRKFLKFSVPYPKNFLRSQW
QSNPNFRGSYSYYSTYADELRTGRTDLASPLVDVTGRPRIQFAGEASSRN
HFSTVHGAIESGWREAERLNEFYEGRAAN*
BS29745.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6034-PA | 479 | CG6034-PA | 1..479 | 1..479 | 2545 | 100 | Plus |
| CG7460-PC | 486 | CG7460-PC | 10..484 | 11..478 | 1404 | 56 | Plus |
| CG7460-PB | 486 | CG7460-PB | 10..484 | 11..478 | 1404 | 56 | Plus |
| CG5653-PA | 476 | CG5653-PA | 3..469 | 12..473 | 1167 | 48.3 | Plus |
| CG7737-PA | 509 | CG7737-PA | 4..496 | 11..473 | 959 | 42.1 | Plus |
