BS29747.complete Sequence
1490 bp assembled on 2012-05-24
GenBank Submission: KX804344
> BS29747.complete
GAAGTTATCAGTCGACATGTGCCTGCCCAAAAGAGTGGGTGGTCCGGCCA
TCCAGAGTGTTGCCACGGCTTTAGGCAACATTCTCTGCTTTAACTTTGGC
CTCATGTTTGGGATTACTCCGGCGCACATGACGCTTTACGAGTCGGAGGA
GAGGACCCCGTTGAACCAGGCCACCGATCCGGCGGGAACTGCATGGCTGA
CGGGATACCTCTTCCTCAGTGCCGCCTTGGGAGCCCTGGTCTCCGGATTC
CTGGCCCTGAAAATCGGGCCCAAGTCAGTGCTCCTCTGCTCTGGCCTGCT
CCAAATTTCGGGTTGGGCCTGCATCCATTTTGGCTACGACATCGTGCACA
TCTACGCCTCCCGTTTGTTTGCGGGCGTGGCATCCGGTGCCGCTTTTGTA
GTGCTTCCGATTTTCATCAACGAAATTGCCGAGTCGCGCGAAAAGGCAGC
CCGCCTAACATTCACCATTGAGCTGTGGCGCACGCTGGGCATCTTGATTG
GATTTGTCCTGGGCTTCTATGTGCCCTACGCCTTCGTGAACATCGTCGGC
TGTGCGGTGTCCTTTGTGTTCACCATGACGTTCCCCTTCGTCCAAGAGAG
CCCCCACTACTATCTGCGCAAGAACAACATGGCCAGCTTGGAGAAGTCGC
TGCGCTGGTATCGCGGCATCCGCGACATCGATGATCGCGAGAAGCCGGAG
TATCTCAGCGAGCTGAACGAGTTCCACGCGGAACTGAGGAGCAGGGACAA
GAACGTGGGCTCCACGCCAATGTCGCATGGCTATATCATACGGCTGACTT
TCGTCAGCTTCCTACTGACCGTGTGCGCCAAACTGAGCGGCGTGTTCGTG
GAGCTCAACTACGCTGCCGACTTTCTCGGCCGCACCGGCTATTCCACGGA
AACCAATTACGTGGTTTTGGCCAGCGCCCAGTGCGCCGGAGCGCTCCTCG
CGCGGCTCGTTGGTCCGCGTTTGCCGCGAAAGCTCCTGCTGTGCCTCTCC
TCGCTCTTTGCTGCGGCGGCAGTCATTGCATTGGCTCTATTCAAGGCTTA
CGGACATCTTTGGCTGCTGGGCAACTGGGCAGATCGGTATCTGCCCATTA
TTCTGCTGGCCATTCAGCTGGCTCTTGTCAGCTTTGGCCTTTATCCCCTG
GCCGCAGTCGTTAGCAGCGAAGTTCTGCCCACGAAGCTCCACGACTTGCT
CTACTCATTGGCATCCGCCGTTTCGTGGCTTCTGCTCTTCGGCATGATAG
AGGCATTCAATGCGGTTAAGGCCACAATTGCCCCCGGGCTGCTTCTCTAT
CTGTGGGTCTTTGCCGGAGCCTCAATATTCGTGGGTCTTATCTCGCTGCC
ACTTCTGCCGGAAACCCGCAATCGTCGTCCTTCGGCGGTGCAGCGGGAAC
TGGGCTATGTGGACGATGGCGGAGTGGCCAAGGGATCGGCGGTTACGAAC
GGACACATCGCCACGCACATCTAAAAGCTTTCTAGACCAT
BS29747.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8837-RB | 1458 | CG8837-PB | 1..1458 | 17..1474 | 7290 | 100 | Plus |
| CG8837-RA | 1458 | CG8837-PA | 1..1458 | 17..1474 | 7290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:23:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8837-RB | 1838 | CG8837-RB | 277..1734 | 17..1474 | 7290 | 100 | Plus |
| CG8837-RA | 1835 | CG8837-RA | 274..1731 | 17..1474 | 7290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:23:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3321517..3322191 | 308..982 | 3375 | 100 | Plus |
| 2L | 23513712 | 2L | 3320803..3321037 | 73..307 | 1175 | 100 | Plus |
| 2L | 23513712 | 2L | 3322814..3323037 | 1251..1474 | 1120 | 100 | Plus |
| 2L | 23513712 | 2L | 3322306..3322511 | 981..1186 | 1030 | 100 | Plus |
| 2L | 23513712 | 2L | 3322689..3322757 | 1185..1253 | 345 | 100 | Plus |
| 2L | 23513712 | 2L | 3320590..3320648 | 17..75 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:23:47 has no hits.
BS29747.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:17 Download gff for
BS29747.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8837-RA | 264..1719 | 17..1472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:47 Download gff for
BS29747.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8837-RA | 274..1729 | 17..1472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:42:04 Download gff for
BS29747.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8837-RA | 274..1729 | 17..1472 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:42:04 Download gff for
BS29747.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3322308..3322511 | 983..1186 | 100 | -> | Plus |
| 2L | 3322691..3322756 | 1187..1252 | 100 | -> | Plus |
| 2L | 3322816..3323035 | 1253..1472 | 100 | | Plus |
| 2L | 3320590..3320647 | 17..74 | 100 | -> | Plus |
| 2L | 3320805..3321037 | 75..307 | 100 | -> | Plus |
| 2L | 3321517..3322191 | 308..982 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:47 Download gff for
BS29747.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3320805..3321037 | 75..307 | 100 | -> | Plus |
| arm_2L | 3320590..3320647 | 17..74 | 100 | -> | Plus |
| arm_2L | 3321517..3322191 | 308..982 | 100 | -> | Plus |
| arm_2L | 3322308..3322511 | 983..1186 | 100 | -> | Plus |
| arm_2L | 3322691..3322756 | 1187..1252 | 100 | -> | Plus |
| arm_2L | 3322816..3323035 | 1253..1472 | 100 | | Plus |
BS29747.pep Sequence
Translation from 16 to 1473
> BS29747.pep
MCLPKRVGGPAIQSVATALGNILCFNFGLMFGITPAHMTLYESEERTPLN
QATDPAGTAWLTGYLFLSAALGALVSGFLALKIGPKSVLLCSGLLQISGW
ACIHFGYDIVHIYASRLFAGVASGAAFVVLPIFINEIAESREKAARLTFT
IELWRTLGILIGFVLGFYVPYAFVNIVGCAVSFVFTMTFPFVQESPHYYL
RKNNMASLEKSLRWYRGIRDIDDREKPEYLSELNEFHAELRSRDKNVGST
PMSHGYIIRLTFVSFLLTVCAKLSGVFVELNYAADFLGRTGYSTETNYVV
LASAQCAGALLARLVGPRLPRKLLLCLSSLFAAAAVIALALFKAYGHLWL
LGNWADRYLPIILLAIQLALVSFGLYPLAAVVSSEVLPTKLHDLLYSLAS
AVSWLLLFGMIEAFNAVKATIAPGLLLYLWVFAGASIFVGLISLPLLPET
RNRRPSAVQRELGYVDDGGVAKGSAVTNGHIATHI*
BS29747.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8837-PB | 485 | CG8837-PB | 1..485 | 1..485 | 2481 | 100 | Plus |
| CG8837-PA | 485 | CG8837-PA | 1..485 | 1..485 | 2481 | 100 | Plus |
| CG33281-PA | 467 | CG33281-PA | 5..467 | 8..462 | 385 | 26.1 | Plus |
| CG14606-PB | 438 | CG14606-PB | 6..434 | 28..453 | 382 | 25.3 | Plus |
| CG14606-PA | 438 | CG14606-PA | 6..434 | 28..453 | 382 | 25.3 | Plus |
