BS29748.complete Sequence
1679 bp assembled on 2012-06-04
GenBank Submission: KX804691
> BS29748.complete
GAAGTTATCAGTCGACATGTCATCGAAGCAACGTCTGATGGATTTCAGTC
AGGTTCTGGATAAGTGTGGAAACTATGGCAGGTTCCAGGTGATGATCCTT
TTGCTGTACGGCTACACAAATATTCTTGGATCACTGCACTACTTTTCGCA
GACCCTTATCACCTTCACACCAGAGCATTGGTGCTTCCATGCTGACCTTA
ATGGTCTCAGTGTTGAAGGGATTCGCTCGGTATATGAAAACATATCCGCC
TCATCCTGCACGCCCCTTTTGGGCGTAGTCAACGGCACAGGTGTTGTATC
TACGAACCGAAAGTGCAGGAATTGGATTTTTAACAGGGAGAGCGGCTACG
AAAGCATTACCACCGAGCTCAAATGGGTTTGTGACAAATCGCATCATCCA
GCAGTGGGCCAATCCTTCTTCTTCATGGGCTCAGTCGTGGGCACCATAAT
CTTTGGCTATCTGTCGGATCAAGTAGGTCGTCTGCCTTCCCTGCTGATGG
CCACCTTGTGTGGTGCAACTGGGGATTTTATCACCTCCTTTGTGCACACG
CTGCCCTGGTTCGCCTTTTCCAGATTTATGTCAGGGCTATCCACTGATAC
CATGTACTACCTAATGTACATATTGGTCTTTGAGTACTTAAGCCCCAAGA
GCCGTACCTTTGGCCTCAACATCATCTTGGCTGTATTCTACTGTTTTGGA
CTGATGACCTCGCCCTGGGCCGCCATTTGGATTGGTAATTGGCGACGCTA
CCTTTGGCTGGCATCTCTTCCAGCACTGGGTGTCCTTATATATCCATTCC
TGATCTGCGAAAGTGCTCAGTGGCTTTTGACCAAAAGGAAGTACGACGAT
GCGGTGATTTGTCTAAAGAAAGTGGCCAAGTTCAATAGGCGACATGTGGA
GGAGTCCGTTTTCGATGAGTTTGTCAAATACTATCGGGAAAGGGAACTTC
AGGATTACAAGCTTAATAGTCACGAGGACACTTTCTTAGCCATGTTTTTG
ACCCCTCGGTTGCGTCGATTCACTTTGACATTGCTCGTGAAGTCAGTCAT
TATAACCCTCTCATGCGATGTGATTAACCGGAATATGGAGGGCTTAGGCA
CTTCGCCCTTTAAGCTCTTCTCCTTCACATCGATTGTATACCTCCCAGCG
GGAGTTGCTATCCTCTTGTTGCAGAACAAGATCGGACGCAAGGGCATGGC
CTGCACCGCCCTCTTTGTGGGTGGACTTATTACCACGGCGACGGGTTTCA
TGATAGCCCACTTGGATCCCACGGAGAACGCCCTGCTGTTGGCTATCATG
GTAGGTCTGGGACGATTTGGAGCCACCGTTTCCTACGATGCGGAAATACA
GTATGCGGCGGAAATCATTCCGACCAGTGTGAGAGGACAGGCGGTATCCA
ACATCCATGTCATTGGATTGGCATCCAGCTCACTGGCCTTCTATGTGATC
TACCTGGCACAATACTACAAGCCTCTCCCCTCGATCTTCATTAGCTGCCT
GATGTTCTTTGGAGCTGGACTTTGTCTCACTTTACCGGAGACCTTAAACA
AGAAGTTGCCCGAAACCTTGGCGGATGGAGAAAAGTTTGCCTTGAACGAG
AGCTTCCTCTACTTTCCTTGTTTTTCAAGAAAAGAAAAAAATGTTAGGAC
TGAAAGTGTATAAAAGCTTTCTAGACCAT
BS29748.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7333-RB | 1626 | CG7333-PB | 1..1626 | 38..1663 | 8130 | 100 | Plus |
| CG16727-RA | 1638 | CG16727-PA | 296..1574 | 336..1614 | 2165 | 78 | Plus |
| CG17752-RA | 1617 | CG17752-PA | 543..707 | 610..774 | 300 | 78.8 | Plus |
| CG16727-RA | 1638 | CG16727-PA | 70..161 | 107..198 | 205 | 81.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7333-RB | 1698 | CG7333-RB | 19..1665 | 17..1663 | 8235 | 100 | Plus |
| CG16727-RA | 2014 | CG16727-RA | 416..1694 | 336..1614 | 2165 | 78 | Plus |
| CG17752-RA | 1716 | CG17752-RA | 585..749 | 610..774 | 300 | 78.8 | Plus |
| CG16727-RA | 2014 | CG16727-RA | 190..281 | 107..198 | 205 | 81.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19601921..19602428 | 1045..1552 | 2540 | 100 | Plus |
| 3R | 32079331 | 3R | 19601445..19601863 | 626..1044 | 2095 | 100 | Plus |
| 3R | 32079331 | 3R | 19601125..19601385 | 366..626 | 1305 | 100 | Plus |
| 3R | 32079331 | 3R | 19600880..19601067 | 180..367 | 940 | 100 | Plus |
| 3R | 32079331 | 3R | 19600653..19600819 | 17..183 | 835 | 100 | Plus |
| 3R | 32079331 | 3R | 19614829..19615278 | 1046..1495 | 825 | 78.9 | Plus |
| 3R | 32079331 | 3R | 19614354..19614649 | 626..921 | 775 | 84.1 | Plus |
| 3R | 32079331 | 3R | 19614006..19614296 | 336..626 | 615 | 80.8 | Plus |
| 3R | 32079331 | 3R | 19602485..19602596 | 1552..1663 | 560 | 100 | Plus |
| 3R | 32079331 | 3R | 19608699..19608937 | 1172..1410 | 235 | 73.2 | Plus |
| 3R | 32079331 | 3R | 19613570..19613645 | 107..182 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:32:48 has no hits.
BS29748.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-04 11:21:28 Download gff for
BS29748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7333-RB | 19..1663 | 17..1661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:35 Download gff for
BS29748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7333-RB | 19..1663 | 17..1661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:46:21 Download gff for
BS29748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7333-RB | 19..1663 | 17..1661 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:46:21 Download gff for
BS29748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19600653..19600816 | 17..180 | 100 | -> | Plus |
| 3R | 19600881..19601067 | 181..367 | 100 | -> | Plus |
| 3R | 19601127..19601385 | 368..626 | 100 | -> | Plus |
| 3R | 19601446..19601863 | 627..1044 | 100 | -> | Plus |
| 3R | 19601921..19602427 | 1045..1551 | 100 | -> | Plus |
| 3R | 19602485..19602594 | 1552..1661 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:35 Download gff for
BS29748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15426375..15426538 | 17..180 | 100 | -> | Plus |
| arm_3R | 15426603..15426789 | 181..367 | 100 | -> | Plus |
| arm_3R | 15426849..15427107 | 368..626 | 100 | -> | Plus |
| arm_3R | 15427168..15427585 | 627..1044 | 100 | -> | Plus |
| arm_3R | 15427643..15428149 | 1045..1551 | 100 | -> | Plus |
| arm_3R | 15428207..15428316 | 1552..1661 | 100 | | Plus |
BS29748.pep Sequence
Translation from 16 to 1662
> BS29748.pep
MSSKQRLMDFSQVLDKCGNYGRFQVMILLLYGYTNILGSLHYFSQTLITF
TPEHWCFHADLNGLSVEGIRSVYENISASSCTPLLGVVNGTGVVSTNRKC
RNWIFNRESGYESITTELKWVCDKSHHPAVGQSFFFMGSVVGTIIFGYLS
DQVGRLPSLLMATLCGATGDFITSFVHTLPWFAFSRFMSGLSTDTMYYLM
YILVFEYLSPKSRTFGLNIILAVFYCFGLMTSPWAAIWIGNWRRYLWLAS
LPALGVLIYPFLICESAQWLLTKRKYDDAVICLKKVAKFNRRHVEESVFD
EFVKYYRERELQDYKLNSHEDTFLAMFLTPRLRRFTLTLLVKSVIITLSC
DVINRNMEGLGTSPFKLFSFTSIVYLPAGVAILLLQNKIGRKGMACTALF
VGGLITTATGFMIAHLDPTENALLLAIMVGLGRFGATVSYDAEIQYAAEI
IPTSVRGQAVSNIHVIGLASSSLAFYVIYLAQYYKPLPSIFISCLMFFGA
GLCLTLPETLNKKLPETLADGEKFALNESFLYFPCFSRKEKNVRTESV*
BS29748.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:02:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7333-PB | 541 | CG7333-PB | 1..541 | 8..548 | 2832 | 100 | Plus |
| CG16727-PA | 545 | CG16727-PA | 1..535 | 8..543 | 2286 | 80.8 | Plus |
| CG17752-PA | 538 | CG17752-PA | 1..528 | 8..547 | 1673 | 59.3 | Plus |
| CG17751-PB | 533 | CG17751-PB | 1..519 | 8..545 | 1660 | 57.6 | Plus |
| CG6231-PF | 585 | CG6231-PF | 1..539 | 8..547 | 1359 | 46.5 | Plus |
