BS29755.complete Sequence
3107 bp assembled on 2012-06-18
GenBank Submission: KX804680
> BS29755.complete
GAAGTTATCAGTCGACATGGACTTCCAGAGCGCCATGGAAACCTTTGCCG
AAGCCTGGGTGGCAGCCAATGCCGGTCAGCAGAGTCAGGCCTTGGCCTTA
ACCAGAGCTGTCAACGCGGCCGCCGTTGTGGCCTCGGCCAATGCCAAATC
CCCCAATGCCTCCTCCTCCGCCTCGGCCAGCCTGGCGGATCTGGCCGTCA
AGAAGGAGCACTCCATCTCGCCGCCCCACAGTGTGGTGAGCGTGGGTGTG
GGCGTGGCTGGCGAGGATCAGCATCGCAGATCCTCGTTGCAGGGTGTGCA
GGAGAAGCTCACCCAGCTGCAGATGCAGCAGCAGCATCACCAGCAGCAGC
AGCAACAGCAGCAGCAGCAACAGCAACAGCACCAGCAGCAGCAGCAACAT
CATCATCATCAGCAGCAAGCACAGCAGGCAGGCGCTGGAGTGGGTAGTGG
CGAGCTGGCTGGACGCAGATCCTCCGAGGGCACACCACCCACCGCCCATC
CCCCAACGAACTCCGAGGGACAGGCGCTCTCCTCCTCCACAGCCTCATCT
AGTCAGAATGCCACCCCCAAGAGCGATCGGGAAAGGGAGCGTGAGCGGGA
GAGGGATCGGGAGGAGCGCGTGGAGCGGGGCAGCATATCCTGCCTCCCAC
CAGCCGCCCTTGGAATGGCCGTGGGCGTCCAGCAGGCCCAGCATCAGGAG
AAGCTGCTCAGCCATCCGGCCTTGGATTCGCGACGGGAGTTCGACGTCAG
CAAAGTGAATCCCAAATCACTTCCACTTCACTGTGTGGTGGAGTCGGTGC
ACTCACTGCACGCCTCCCTGACCATCGACACTCGCCAGCCCTGGAAGAGG
CGGCCCAATATCGAGACCGACAGCTACGTGATCATCGCCGCGGCCACGCC
CTGGAGCGAGATTGTTCAGACGGCGCTCCAGAGGCTCGGCTACTCCCAGG
AGGTGGCCAACACAGCCAGAGGCTCATTAATAATCAAACATTGGAAACCC
ATACCCCTGGAGCAGATATCGGACAATCCAGCGGTGCCCGTCAGCGATAT
TGTGGGTGAATTGACTTCCGTGATCACGCTGAGGATCGTGATTCTGCGCC
CCAAGACTTCGCCGTTCGGGGAGATCAAGGACAAGCTGCTCAAGCTGCTG
GTGCTTCAGTCGCATGCGGTGCTCCGTTCCACAGGATGTCCGCTGGATGA
GGTGACGCTATCCCAGATCTGCCGGAGTTCCCACCAGAACACCTACGCCC
TGCCAGGAGGAGAGATCTCCGACGAACTGCGCCGCAAGTTCGACCAGTGG
TGGTCCAATCAGCTCTCTCCCCAAGCGACCGCCATGACGCCCAAGATGCT
GCCGTTCATGACGGGTCCTTCAGCGGTTCCGGTTCCAGTGGCAGTGCCCG
GCGAGATGGACTTTCCGGTAGGCACGGCCATGGCGGCGGCGGCCGCTGCG
GCGGCTCATGCTGCCGCTGCCGGTGGAGCAGCGGGCGGCAATCCCCTGGG
ATCGATGGGTAGTCGCGAGAGTCTGTTGCTGGCTAACGAGGCTGCTCACC
ATGCGGGCGCTGGACAGGCTCCGGGACCAGGACATCACGGCAGCATGCTG
GTGCATCCGATGCACGCGTCCATGCACCACCATCACCATCATGGCGGCGG
CGGTGGACACGGTCCTCCGTATCCCAATCAGAAGACTCGCATGCGCACCA
GCTTCGATCCGGAGATGGAGCTGCCCAAGCTGCAGAAGTGGTTCGCCGAC
AATCCGCATCCTTCGCGACAGCAGATCCAGACGTATGTGGTGCAGCTGAA
TGCCCTGGAGTCTCGCCGGGGAAGGAAGCCCCTGGATGTGAACAACGTGG
TCTACTGGTTCAAGAACGCTCGGGCGGCTCAAAAACGGGCAGAGATGCGG
GGTGGTAGTCTGGGCAGTGCGATCAGTGCCCTGGGTCACGCCGCCATGAA
CGGCTATCTGAGTCAGCACGCCCCTTTGGGCCAGAATTCCAGCAGCAGTG
CTGGTAGCCAGCCCATGAGCATGGGCAACCTGTCCATGTCGCACGACTAC
CTAAAGAGTCCGCTCAGCCTGAAGTCGGAGGACATTGACACCATGTCGCA
GCACTCGGACGACATGGACGAGGAGCAGAGCAGACCGAACACGCCACAAC
TGCCCCTTTCGCTGACCACCCACGAGCGGCATCGCAGCTCACCGCTGATG
GACGAGGACGAGGATGAGGCGGGAGAGCAGCAGCAGCCACAGGAGGCCAA
AAGCGATGGAATGAACGGTAGTGTGAAGGATGAGGAGCGGCAGGAGAAGT
CGCGCGATGAACTGCAGGACAACGAAAAGGAGAACTCCAACGGGGAAGAC
CGTCATCTGGATGCAGACGCCCAGATGGAGGCCAGTTCCAACCTCAACAA
TAACCACAACAACAGCAGCTTGCACATTGAGCAGGAGGTGGGCTCCACAC
CCAAGCGCTCCACGCCCAAGGAGGAGGACGACGACTTGGATATGGACGAG
GATGAGGAGGACAACGAAAACGATGCCAGCCATTTGGACGAGTTTCGCTC
GCCCTCGCCGGATCTAGCAGGTGGAGTTGTGCCCCACAAGGACCAGCTGC
CCTTTCCTATGGTTCCCAACTCCATGTTCTCGCAGTCCTTCATGTACATG
AGCCACTACATCCCGGCATTCGGTCAAGCGGCCGCCGGACATCCGCATCA
CCATGCTGCCGCTGCAGCGGCAGCTGCCGGAATCCAACCCAACGCCCTCA
TGGGCGGCGGCGGCCTCAACCTGTCGAGCATATCGAACGAGGAGCGCCGG
AAGCGAAACCGCACCTTCATCGACCCGGTGACCGAGGTGCCCAAGCTGGA
GCAGTGGTTCGCCATGAACACACATCCCTCGCACAACCTCATCCTCAAGT
ACACCGAGGACTTGAACACCATGCCATATAGGCAAAAGTTCCCGCGCTTG
GAGAGCAAAAACGTGCAGTTCTGGTTCAAGAATCGACGGGCCAAGTGCAA
GCGCCTCAAGATGTCGCTGTACGACAGCAATCAGTGCGCCCAGCTGGGAG
GACTCGGCTCTTTTGTGCCCAAGTACGAGGAGCGGGACTAGAAGCTTTCT
AGACCAT
BS29755.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:35:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dve-RA | 3075 | CG5799-PA | 1..3075 | 17..3091 | 15375 | 100 | Plus |
| dve-RB | 2343 | CG5799-PB | 14..2343 | 762..3091 | 11650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dve-RA | 4903 | CG5799-RA | 716..3794 | 13..3091 | 15380 | 100 | Plus |
| dve-RB | 3469 | CG5799-RB | 31..2360 | 762..3091 | 11650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22283346..22285078 | 1200..2932 | 8665 | 100 | Plus |
| 2R | 25286936 | 2R | 22262762..22263443 | 80..761 | 3410 | 100 | Plus |
| 2R | 25286936 | 2R | 22280988..22281223 | 970..1205 | 1180 | 100 | Plus |
| 2R | 25286936 | 2R | 22280667..22280877 | 762..972 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 22285199..22285360 | 2930..3091 | 810 | 100 | Plus |
| 2R | 25286936 | 2R | 22244678..22244747 | 13..82 | 335 | 98.6 | Plus |
Blast to na_te.dros performed 2014-11-28 11:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2415 | 2310..2419 | 121 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1379..1420 | 2395..2436 | 120 | 76.2 | Plus |
BS29755.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-18 13:50:58 Download gff for
BS29755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dve-RA | 720..3794 | 17..3091 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:30 Download gff for
BS29755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dve-RA | 720..3794 | 17..3091 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:47:11 Download gff for
BS29755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dve-RA | 720..3794 | 17..3091 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:47:11 Download gff for
BS29755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22244682..22244747 | 17..82 | 100 | -> | Plus |
| 2R | 22262765..22263443 | 83..761 | 100 | -> | Plus |
| 2R | 22280667..22280876 | 762..971 | 100 | -> | Plus |
| 2R | 22280990..22281219 | 972..1201 | 100 | -> | Plus |
| 2R | 22283348..22285077 | 1202..2931 | 100 | -> | Plus |
| 2R | 22285201..22285360 | 2932..3091 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:30 Download gff for
BS29755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18132187..18132252 | 17..82 | 100 | -> | Plus |
| arm_2R | 18150270..18150948 | 83..761 | 100 | -> | Plus |
| arm_2R | 18168172..18168381 | 762..971 | 100 | -> | Plus |
| arm_2R | 18168495..18168724 | 972..1201 | 100 | -> | Plus |
| arm_2R | 18170853..18172582 | 1202..2931 | 100 | -> | Plus |
| arm_2R | 18172706..18172865 | 2932..3091 | 100 | | Plus |
BS29755.pep Sequence
Translation from 16 to 3090
> BS29755.pep
MDFQSAMETFAEAWVAANAGQQSQALALTRAVNAAAVVASANAKSPNASS
SASASLADLAVKKEHSISPPHSVVSVGVGVAGEDQHRRSSLQGVQEKLTQ
LQMQQQHHQQQQQQQQQQQQQHQQQQQHHHHQQQAQQAGAGVGSGELAGR
RSSEGTPPTAHPPTNSEGQALSSSTASSSQNATPKSDRERERERERDREE
RVERGSISCLPPAALGMAVGVQQAQHQEKLLSHPALDSRREFDVSKVNPK
SLPLHCVVESVHSLHASLTIDTRQPWKRRPNIETDSYVIIAAATPWSEIV
QTALQRLGYSQEVANTARGSLIIKHWKPIPLEQISDNPAVPVSDIVGELT
SVITLRIVILRPKTSPFGEIKDKLLKLLVLQSHAVLRSTGCPLDEVTLSQ
ICRSSHQNTYALPGGEISDELRRKFDQWWSNQLSPQATAMTPKMLPFMTG
PSAVPVPVAVPGEMDFPVGTAMAAAAAAAAHAAAAGGAAGGNPLGSMGSR
ESLLLANEAAHHAGAGQAPGPGHHGSMLVHPMHASMHHHHHHGGGGGHGP
PYPNQKTRMRTSFDPEMELPKLQKWFADNPHPSRQQIQTYVVQLNALESR
RGRKPLDVNNVVYWFKNARAAQKRAEMRGGSLGSAISALGHAAMNGYLSQ
HAPLGQNSSSSAGSQPMSMGNLSMSHDYLKSPLSLKSEDIDTMSQHSDDM
DEEQSRPNTPQLPLSLTTHERHRSSPLMDEDEDEAGEQQQPQEAKSDGMN
GSVKDEERQEKSRDELQDNEKENSNGEDRHLDADAQMEASSNLNNNHNNS
SLHIEQEVGSTPKRSTPKEEDDDLDMDEDEEDNENDASHLDEFRSPSPDL
AGGVVPHKDQLPFPMVPNSMFSQSFMYMSHYIPAFGQAAAGHPHHHAAAA
AAAAGIQPNALMGGGGLNLSSISNEERRKRNRTFIDPVTEVPKLEQWFAM
NTHPSHNLILKYTEDLNTMPYRQKFPRLESKNVQFWFKNRRAKCKRLKMS
LYDSNQCAQLGGLGSFVPKYEERD*
BS29755.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:04:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dve-PA | 1024 | CG5799-PA | 1..1024 | 1..1024 | 5344 | 100 | Plus |
| dve-PB | 780 | CG5799-PB | 6..780 | 250..1024 | 4092 | 100 | Plus |
| Sp1-PB | 520 | CG1343-PB | 336..481 | 19..137 | 175 | 33.3 | Plus |
| crol-PH | 686 | CG14938-PH | 529..639 | 16..136 | 175 | 37.7 | Plus |
| crol-PC | 756 | CG14938-PC | 599..709 | 16..136 | 175 | 37.7 | Plus |
