BS29756.complete Sequence
854 bp assembled on 2012-05-24
GenBank Submission: KX800806
> BS29756.complete
GAAGTTATCAGTCGACATGCTCCGAACCCGACTCATCCAGGCGGCCAGCT
CCGCCCAGCGAGCGTTCTCCACCAGCCAGAAGGCCCTGGCGGCCAAGCAG
ATGACCGTGCGAGATGCCCTCAACAGCGCATTGGACGATGAGCTGGCCCG
CGACGACCGCGTCTTCATCCTGGGCGAGGAGGTGGCCCAGTACGACGGTG
CTTACAAGGTTTCCCGTGGACTGTGGAAGAAGTACGGCGACAAGCGCGTC
ATCGACACGCCAATCACAGAGATGGGCTTTGCCGGCATCGCTGTTGGCGC
TGCCATGGCCGGTCTGCGTCCCGTGTGCGAGTTCATGACCTGGAACTTCT
CCATGCAGGCCATCGATCACGCAAAGATACTCGATTGCGCCAAGCCGCCA
GTCGGTGATCGCCCTCTGCCAATAAGCCTCATAATTGAAAGTCCACGCTC
AACTTGGCTGAATGAGATCAACGACATCCTGCACAGAGATCGAGTCGGCG
AGGTGATTGCGCCGCCGCTGGACAAGAGCAAGTCGGACAAGATGGAGGCG
GCCCGCCTCATCGTCATTCGGCGGCGCAAGATGAAGAAGCACAAGCTAAA
GAAGCTGCGTCGCAAGATGAAGTTCGAGTGGGCCAAGGTGCGCCAGCGCC
GCGAGATGCGCAAAGAGAAGGCCTTCCAAGCAAAGCTGATATCCCAGATC
AAGCAGGCGGAGGCATTCAGTGCGGAGCAGCACGTGGCGGAGATCCTGCG
GCAGGCCAACGAGACGCCGCTGCCGCGTTTCTGGAAGGGACGCCGCCTGC
CGGCATTTATCATTAAGCAGAAACTAGGCATTAAGTAAAAGCTTTCTAGA
CCAT
BS29756.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11876-RB | 822 | CG11876-PB | 1..822 | 17..838 | 4110 | 100 | Plus |
| CG11876-RC | 822 | CG11876-PC | 1..822 | 17..838 | 4110 | 100 | Plus |
| CG11876-RD | 1098 | CG11876-PD | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:24:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11876-RB | 1025 | CG11876-RB | 154..976 | 17..839 | 4115 | 100 | Plus |
| CG11876-RC | 991 | CG11876-RC | 120..942 | 17..839 | 4115 | 100 | Plus |
| CG11876-RD | 1386 | CG11876-RD | 51..404 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:24:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29114429..29114897 | 371..839 | 2345 | 100 | Plus |
| 3R | 32079331 | 3R | 29113258..29113451 | 17..210 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 29113992..29114156 | 207..371 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:24:25 has no hits.
BS29756.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:24 Download gff for
BS29756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11876-RB | 154..973 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:06 Download gff for
BS29756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11876-RC | 120..939 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:42:22 Download gff for
BS29756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11876-RC | 120..939 | 17..836 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:42:22 Download gff for
BS29756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29113258..29113449 | 17..208 | 100 | -> | Plus |
| 3R | 29113994..29114155 | 209..370 | 100 | -> | Plus |
| 3R | 29114429..29114894 | 371..836 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:06 Download gff for
BS29756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24938980..24939171 | 17..208 | 100 | -> | Plus |
| arm_3R | 24939716..24939877 | 209..370 | 100 | -> | Plus |
| arm_3R | 24940151..24940616 | 371..836 | 100 | | Plus |
BS29756.pep Sequence
Translation from 16 to 837
> BS29756.pep
MLRTRLIQAASSAQRAFSTSQKALAAKQMTVRDALNSALDDELARDDRVF
ILGEEVAQYDGAYKVSRGLWKKYGDKRVIDTPITEMGFAGIAVGAAMAGL
RPVCEFMTWNFSMQAIDHAKILDCAKPPVGDRPLPISLIIESPRSTWLNE
INDILHRDRVGEVIAPPLDKSKSDKMEAARLIVIRRRKMKKHKLKKLRRK
MKFEWAKVRQRREMRKEKAFQAKLISQIKQAEAFSAEQHVAEILRQANET
PLPRFWKGRRLPAFIIKQKLGIK*
BS29756.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11876-PB | 273 | CG11876-PB | 1..273 | 1..273 | 1384 | 100 | Plus |
| CG11876-PC | 273 | CG11876-PC | 1..273 | 1..273 | 1384 | 100 | Plus |
| CG11876-PD | 365 | CG11876-PD | 1..118 | 1..118 | 596 | 100 | Plus |
| CG11876-PA | 365 | CG11876-PA | 1..118 | 1..118 | 596 | 100 | Plus |
