Clone BS29757 Report

Search the DGRC for BS29757

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:297
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptNot11-RB
Protein status:BS29757.pep: full length peptide match
Sequenced Size:716

Clone Sequence Records

BS29757.complete Sequence

716 bp assembled on 2012-05-24

GenBank Submission: KX806480

> BS29757.complete
GAAGTTATCAGTCGACATGTTTCTGTCCATCGCCCCGCCCCTAATGGACT
TCGAGGACGAGCTGCTCTGGATAAACCAGTCGAACAGCGACAAGGTGGAG
ATCATCTACGACAAGTCCAACTACATTACCCCCAACATAAAGCACCTCAT
CGAGCAGGCTTTTCTCCAGCCACTCAGCCTCCAGAACCAGCACATCCTCT
TCGACGACCTGCTGAAGCAGAACACGGACATTGCGCGCCAATATGGACTG
ACCCCGGACAAGCTACCTCTGCTCGTGGAAAGCAATCCTCTCATCTCCAT
TGAGATCTTGCTAAGACTGATGACGACCTCCGACATAACTGAATACTTCA
ACGTGTTGGTCAACATGGACATAACACTTCACTCCATGGAGGTGGTCAAC
CGACTAACCACCTCCGGACCTTTGCCCACTGAGTTTATTCACCTATACAT
CAGCAATTGCATCTCGACTTGCGAAACAGTCAAGGACAAGTACATGCAGT
CTCGCCTGGTGCGACTCGTTTGCGTATTTCTGCAGTCCTTGATTAGGAAC
AAGATTGTGAACGTTAGGGAACTATTCATTGAAATCGAAGCCTTCTGCGT
GGGTTTCAGCAAAATCAAGGAGGCTGCTACCCTGTACCGGCTTATCAAAC
ACTTGGAAACTGGGGAAAGCGCTCTGTCGTCCAACTCCCTAGCTAAGTAG
AAGCTTTCTAGACCAT

BS29757.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
Not11-RC 684 CG13567-PC 1..684 17..700 3420 100 Plus
Not11-RB 684 CG13567-PB 1..684 17..700 3420 100 Plus
Not11-RA 744 CG13567-PA 1..553 17..569 2765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
Not11-RC 1022 CG13567-RC 275..959 16..700 3425 100 Plus
Not11-RB 815 CG13567-RB 68..752 16..700 3425 100 Plus
Not11-RA 875 CG13567-RA 68..621 16..569 2770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24037395..24037641 262..16 1235 100 Minus
2R 25286936 2R 24036974..24037141 569..402 840 100 Minus
2R 25286936 2R 24037201..24037342 402..261 710 100 Minus
2R 25286936 2R 24036783..24036915 700..568 665 100 Minus
Blast to na_te.dros performed on 2014-11-28 11:24:29 has no hits.

BS29757.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:24 Download gff for BS29757.complete
Subject Subject Range Query Range Percent Splice Strand
CG13567-RB 166..843 23..700 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:08 Download gff for BS29757.complete
Subject Subject Range Query Range Percent Splice Strand
CG13567-RB 75..752 23..700 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:42:23 Download gff for BS29757.complete
Subject Subject Range Query Range Percent Splice Strand
Not11-RB 75..752 23..700 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:42:23 Download gff for BS29757.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24036783..24036914 569..700 100 <- Minus
2R 24036975..24037140 403..568 100 <- Minus
2R 24037201..24037340 263..402 100 <- Minus
2R 24037395..24037634 23..262 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:08 Download gff for BS29757.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19924306..19924437 569..700 100 <- Minus
arm_2R 19924498..19924663 403..568 100 <- Minus
arm_2R 19924724..19924863 263..402 100 <- Minus
arm_2R 19924918..19925157 23..262 100   Minus

BS29757.pep Sequence

Translation from 16 to 699

> BS29757.pep
MFLSIAPPLMDFEDELLWINQSNSDKVEIIYDKSNYITPNIKHLIEQAFL
QPLSLQNQHILFDDLLKQNTDIARQYGLTPDKLPLLVESNPLISIEILLR
LMTTSDITEYFNVLVNMDITLHSMEVVNRLTTSGPLPTEFIHLYISNCIS
TCETVKDKYMQSRLVRLVCVFLQSLIRNKIVNVRELFIEIEAFCVGFSKI
KEAATLYRLIKHLETGESALSSNSLAK*

BS29757.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
Not11-PC 227 CG13567-PC 1..227 1..227 1146 100 Plus
Not11-PB 227 CG13567-PB 1..227 1..227 1146 100 Plus
Not11-PA 247 CG13567-PA 1..247 1..227 1115 91.9 Plus