BS29760.complete Sequence
1046 bp assembled on 2012-05-24
GenBank Submission: KX800652
> BS29760.complete
GAAGTTATCAGTCGACATGGGAAAAGGCGTTAACACAGTCTTTAGGCCAG
CAGAATGGGACAATTCGGAGGAGAAGGAAAGACCCAAGTTGGAGTACTTG
GTGACCAACAAGAAGACTCCGCCGGTTGAACTCTACCTCACGGCATTCGC
CTCCGCCTGCAGTGCCGAGATTGTGGGCTATCCCTTCGATATGTGCAAGA
CCCGAATGCAGATCCAGGGCGAGATCGCGAGCAGGGTGGGTCAGAAGGCC
AAGTACCGAGGTCTGCTGGCCACTGCCATGGGCATCGTCAGGGAGGAGGG
TCTGCTGAAGCTCTACGGTGGCATATCCGCCATGCTGTTCCGCCACTCGC
TCTTCAGTGGCATCAAAATGCTGACCTACGACTATATGCGTGAGAAGATG
ATCGTGCCCGACGAGGACGGCAGGCCGCAGCTATCCTTCCTGGGATCCTG
CATCAGTGGCGTCTTAGCCGGCGCAACTGCCAGCGTACTAACGAATCCCA
CCGAGCTGATTAAGATCCAAATGCAAATGGAGGGACAGCGGCGTCTAAGG
GGCGAGCCTCCACGCATTCACAATGTGCTCCAGGCCCTGACTTCCATTTA
CAGAACGGGTGGTGTGGTGGGTCTCTGGAAGGGAACTGTTCCAAACACAT
GGCGCTCGGCACTCGTGACCATAGGGGACGTCAGCTGCTATGACTTTTGC
AAACGCTTTCTGATTGCCGAGTTCGATCTGGTGGATAACCGAGAAGTGCA
GTTCGTAGCCGCCATGACCGCCGGCGTAGCGGATGCCATTCTGAGCTTGC
CAGCGGACGTGGTCAAGTCCCGGATCATGAATCAGCCAACCGATGAGCAG
GGACGCGGCATTCATTACAAGGGCTCCCTGGATTGCTTAAGTAGGTTGGT
TAGAGAGGAGGGCTTTTTGGCCATGTACAAGGGATTCATTCCATATTGGA
TGCGTGTCGGACCTGCCTCCGTGGTGTTCTGGATGACCTTCGAGCAGATT
AGACGGTTTCGTGGCAGCGAAGGTTACTAGAAGCTTTCTAGACCAT
BS29760.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:24:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ucp4B-RA | 1014 | CG18340-PA | 1..1014 | 17..1030 | 5070 | 100 | Plus |
| Ucp4B-RC | 687 | CG18340-PC | 1..687 | 17..713 | 3300 | 98.6 | Plus |
| Ucp4B-RB | 669 | CG18340-PB | 1..659 | 17..675 | 3295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:24:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ucp4B-RA | 1098 | CG18340-RA | 44..1057 | 17..1030 | 5070 | 100 | Plus |
| Ucp4B-RC | 1088 | CG18340-RC | 44..1047 | 17..1030 | 4885 | 99 | Plus |
| Ucp4B-RB | 793 | CG18340-RB | 44..702 | 17..675 | 3295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:24:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5969902..5970560 | 17..675 | 3295 | 100 | Plus |
| 2L | 23513712 | 2L | 5970627..5970984 | 673..1030 | 1790 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:24:21 has no hits.
BS29760.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:23 Download gff for
BS29760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4B-RA | 32..1045 | 17..1030 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:05 Download gff for
BS29760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4B-RA | 44..1057 | 17..1030 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:42:19 Download gff for
BS29760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4B-RA | 44..1057 | 17..1030 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:42:19 Download gff for
BS29760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5969902..5970559 | 17..674 | 100 | -> | Plus |
| 2L | 5970629..5970984 | 675..1030 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:05 Download gff for
BS29760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5969902..5970559 | 17..674 | 100 | -> | Plus |
| arm_2L | 5970629..5970984 | 675..1030 | 100 | | Plus |
BS29760.pep Sequence
Translation from 16 to 1029
> BS29760.pep
MGKGVNTVFRPAEWDNSEEKERPKLEYLVTNKKTPPVELYLTAFASACSA
EIVGYPFDMCKTRMQIQGEIASRVGQKAKYRGLLATAMGIVREEGLLKLY
GGISAMLFRHSLFSGIKMLTYDYMREKMIVPDEDGRPQLSFLGSCISGVL
AGATASVLTNPTELIKIQMQMEGQRRLRGEPPRIHNVLQALTSIYRTGGV
VGLWKGTVPNTWRSALVTIGDVSCYDFCKRFLIAEFDLVDNREVQFVAAM
TAGVADAILSLPADVVKSRIMNQPTDEQGRGIHYKGSLDCLSRLVREEGF
LAMYKGFIPYWMRVGPASVVFWMTFEQIRRFRGSEGY*
BS29760.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ucp4B-PA | 337 | CG18340-PA | 1..337 | 1..337 | 1752 | 100 | Plus |
| Ucp4B-PB | 222 | CG18340-PB | 1..221 | 1..221 | 1137 | 99.5 | Plus |
| Ucp4B-PC | 228 | CG18340-PC | 1..219 | 1..219 | 1129 | 100 | Plus |
| Ucp4A-PB | 340 | CG6492-PB | 44..340 | 40..337 | 772 | 48 | Plus |
| Ucp4A-PA | 340 | CG6492-PA | 44..340 | 40..337 | 772 | 48 | Plus |
