BS29765.complete Sequence
1100 bp assembled on 2012-05-24
GenBank Submission: KX803161
> BS29765.complete
GAAGTTATCAGTCGACATGACGGCCAAGATGAAGCTGCGGTCCCAGCTGC
ATCTGCTCACTGGTTTCATGGCTGGATTCGTGCTGGCCTTCGTGCTCCTC
CTCTACGTCTACGATGTCAGCAGGGTGACGCCCTGCTGGAGCAGCACCTC
CACCATGACCACGGCCACAACGGCCAGGATTGAGGATGGTCCACCACCGC
GCATTCTGTGCATGGTGCTCACCTGTCCGGAGAACGTGCAGAGCCTGGCC
AGAAGTGTCTACGAGACCTGGGGCCAGCGCTGCAGCCGCCTGATCTTCGC
CAGCAGCGAGGACTACGAGCCACTGGGCGTGGTCGGTGTGGTGGAGCCAA
CTGGCGGTGGCTACGAGGATCTGTGGAATAAAACGCGCGAGGGATTCCGA
CACGTTTGGGAGCACTACGCTGGCGACTACGATTGGTTCCTCAAGGCAGA
TGACGATACGTACGTGGTCATGGAGAATCTGCAGCACCTGCTCCGTGGCT
TCGATCCGAATACGCCCGTCTTCTTTGGCTACAAGATGTCGCGATACAAT
GTGAGTTATATGTCTGGCGGAGCTTCGTATATTCTGAGTCGTGAGGCCCT
ACATCGATTTGCAACACAAGCCTATGAATCTGAGGTGATTTGTCCGCAGC
CAAAAAAGATGGGCATCGAGGACTTTTACATGGGAATTTGTATGCAGAAT
GTGGGCGTCCACTTTGTCGACTCCACACACGCTTTGGATGGAGACACGAA
GCCGAAGTTTATGCCCCTGGATCTGGAGAACTATATGTCGGATGCGAATT
ACACAATTCCGGAGTGGCTGCGCCTCATGAGTCTATCTCGAGTTGAAACG
GGCTTGGCCTGCTGTTCCAACTACTCTGTGGCCTTTCATTATGCCAGTCG
AGAACGGATGTTCCTCTACGAGTTTCTAATCTATCATCTGAAAGTATTTG
ATCCTAACCAGATTTCAGAACGCGGACACAGAAGTCGATTAACTTTATCT
GATTTAACGAGAAGATTTCCACTGGAAGATAACTCCAATATAAAAGACTT
GCTGCAAATGTCCGAGAAACCTGATAATTTTTAGAAGCTTTCTAGACCAT
BS29765.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:24:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3119-RA | 1068 | CG3119-PA | 1..1068 | 17..1084 | 5340 | 100 | Plus |
| CG3119-RB | 555 | CG3119-PB | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:24:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3119-RA | 1193 | CG3119-RA | 46..1113 | 17..1084 | 5340 | 100 | Plus |
| CG3119-RB | 682 | CG3119-RB | 46..582 | 17..553 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:24:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2837344..2837788 | 461..17 | 2225 | 100 | Minus |
| 2L | 23513712 | 2L | 2835254..2835552 | 851..553 | 1495 | 100 | Minus |
| 2L | 23513712 | 2L | 2834967..2835201 | 1084..850 | 1175 | 100 | Minus |
| 2L | 23513712 | 2L | 2837193..2837286 | 553..460 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:24:42 has no hits.
BS29765.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:27 Download gff for
BS29765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3119-RA | 44..1111 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:13 Download gff for
BS29765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3119-RA | 46..1113 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:42:28 Download gff for
BS29765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3119-RA | 46..1113 | 17..1084 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:42:28 Download gff for
BS29765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2834967..2835200 | 851..1084 | 100 | <- | Minus |
| 2L | 2835255..2835551 | 554..850 | 100 | <- | Minus |
| 2L | 2837193..2837286 | 460..553 | 100 | <- | Minus |
| 2L | 2837346..2837788 | 17..459 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:13 Download gff for
BS29765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2835255..2835551 | 554..850 | 100 | <- | Minus |
| arm_2L | 2837193..2837286 | 460..553 | 100 | <- | Minus |
| arm_2L | 2834967..2835200 | 851..1084 | 100 | <- | Minus |
| arm_2L | 2837346..2837788 | 17..459 | 100 | | Minus |
BS29765.pep Sequence
Translation from 16 to 1083
> BS29765.pep
MTAKMKLRSQLHLLTGFMAGFVLAFVLLLYVYDVSRVTPCWSSTSTMTTA
TTARIEDGPPPRILCMVLTCPENVQSLARSVYETWGQRCSRLIFASSEDY
EPLGVVGVVEPTGGGYEDLWNKTREGFRHVWEHYAGDYDWFLKADDDTYV
VMENLQHLLRGFDPNTPVFFGYKMSRYNVSYMSGGASYILSREALHRFAT
QAYESEVICPQPKKMGIEDFYMGICMQNVGVHFVDSTHALDGDTKPKFMP
LDLENYMSDANYTIPEWLRLMSLSRVETGLACCSNYSVAFHYASRERMFL
YEFLIYHLKVFDPNQISERGHRSRLTLSDLTRRFPLEDNSNIKDLLQMSE
KPDNF*
BS29765.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3119-PA | 355 | CG3119-PA | 1..355 | 1..355 | 1904 | 100 | Plus |
| CG3119-PB | 184 | CG3119-PB | 1..179 | 1..179 | 970 | 100 | Plus |
| C1GalTA-PA | 388 | CG9520-PA | 100..344 | 62..311 | 529 | 40.6 | Plus |
| C1GalTA-PC | 388 | CG9520-PC | 100..344 | 62..311 | 529 | 40.6 | Plus |
| C1GalTA-PB | 388 | CG9520-PB | 100..344 | 62..311 | 529 | 40.6 | Plus |
