BS29771.complete Sequence
833 bp assembled on 2012-05-24
GenBank Submission: KX806279
> BS29771.complete
GAAGTTATCAGTCGACATGGCGGATCCAGAGCGACAAAGCCTGATCAACA
AGGACGACGGCAATGGCTACAATTCCGTGGACGCCGTGGACGAGGGTGCC
GATAATCCCGGCAGCAACTCATCGGTGGCCACAAACGAGGACGGCAATGG
AGCACCGACCGCAGTGCCTTGCATTGGACCCGATGAGCTGCCGCCGCCGT
ATCAGCAGAGTACCAACACCGGAGGCGTCCCGATGGTCACCTGTCGGGTA
TGTCAACACATGATTGACATCACCACGAAGCGGGAGCAGCACGTGGTCAA
GTGCACCCACTGCAATGAGGCTACTCCCATTCGGAACGCTCCAGCGGGCA
AGAAGTATGTTCGCTGCCCATGCAACTGTTTGTTAATCTGCAAGAGCTCG
TCGCAGCGAATCGCTTGTCCAAGGCCCAATTGCAAGAGGATCATCAACCT
GGCCCCAAGTCCCGTCACCCCGCCCGTGCCAACCATGCCGGGCATGTGCC
GCGTCACTTGTGGCCACTGTTCGGACACGTTTTTGTTCAACACGTATCAC
AACGCCTTGGCCCGGTGTCCACACTGCAGGAAGGTCTCATCGGTGGGCTC
GCGCTTTGCCAACAGCCGCGCCGTGATGTTCGCCATCGTGGCGCTGGTGT
TCCTCATCACAGGCATCGCTGTAACTATCGGCACATACTCGATTGCTTCG
GATCATGGTGGCATGTACTTCCTCTACGTGGCGCTGTTCGTGATTTCGGG
TTGCATGCTGGCCAGGTCCGCCTACTATTTCCGCCTTAAAGTGAGCGCCA
TCGATGGGCCAATGTAAAAGCTTTCTAGACCAT
BS29771.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:24:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6707-RC | 801 | CG6707-PC | 1..801 | 17..817 | 4005 | 100 | Plus |
| CG6707-RA | 801 | CG6707-PA | 1..801 | 17..817 | 4005 | 100 | Plus |
| CG6707-RB | 696 | CG6707-PB | 22..696 | 143..817 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6707-RC | 2135 | CG6707-RC | 382..1183 | 17..818 | 4010 | 100 | Plus |
| CG6707-RA | 1954 | CG6707-RA | 201..1002 | 17..818 | 4010 | 100 | Plus |
| CG6707-RB | 1666 | CG6707-RB | 39..714 | 143..818 | 3380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:24:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9896179..9896388 | 535..326 | 1050 | 100 | Minus |
| 3L | 28110227 | 3L | 9896454..9896636 | 325..143 | 915 | 100 | Minus |
| 3L | 28110227 | 3L | 9895957..9896123 | 701..535 | 835 | 100 | Minus |
| 3L | 28110227 | 3L | 9897928..9898055 | 144..17 | 640 | 100 | Minus |
| 3L | 28110227 | 3L | 9895759..9895877 | 818..700 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:24:33 has no hits.
BS29771.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:25 Download gff for
BS29771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6707-RC | 382..1180 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:10 Download gff for
BS29771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6707-RA | 201..999 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:42:24 Download gff for
BS29771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6707-RA | 201..999 | 17..815 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:42:24 Download gff for
BS29771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9897929..9898055 | 17..143 | 100 | | Minus |
| 3L | 9896179..9896388 | 326..535 | 100 | <- | Minus |
| 3L | 9896454..9896635 | 144..325 | 100 | <- | Minus |
| 3L | 9895762..9895876 | 701..815 | 100 | <- | Minus |
| 3L | 9895958..9896122 | 536..700 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:10 Download gff for
BS29771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9888862..9888976 | 701..815 | 100 | <- | Minus |
| arm_3L | 9889058..9889222 | 536..700 | 100 | <- | Minus |
| arm_3L | 9889279..9889488 | 326..535 | 100 | <- | Minus |
| arm_3L | 9889554..9889735 | 144..325 | 100 | <- | Minus |
| arm_3L | 9891029..9891155 | 17..143 | 100 | | Minus |
BS29771.pep Sequence
Translation from 16 to 816
> BS29771.pep
MADPERQSLINKDDGNGYNSVDAVDEGADNPGSNSSVATNEDGNGAPTAV
PCIGPDELPPPYQQSTNTGGVPMVTCRVCQHMIDITTKREQHVVKCTHCN
EATPIRNAPAGKKYVRCPCNCLLICKSSSQRIACPRPNCKRIINLAPSPV
TPPVPTMPGMCRVTCGHCSDTFLFNTYHNALARCPHCRKVSSVGSRFANS
RAVMFAIVALVFLITGIAVTIGTYSIASDHGGMYFLYVALFVISGCMLAR
SAYYFRLKVSAIDGPM*
BS29771.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6707-PC | 266 | CG6707-PC | 1..266 | 1..266 | 1442 | 100 | Plus |
| CG6707-PA | 266 | CG6707-PA | 1..266 | 1..266 | 1442 | 100 | Plus |
| CG6707-PB | 231 | CG6707-PB | 8..231 | 43..266 | 1223 | 100 | Plus |
