BS29776.complete Sequence
1001 bp assembled on 2012-05-24
GenBank Submission: KX806362
> BS29776.complete
GAAGTTATCAGTCGACATGTCCAAGCCAGTACCAATGAGTCCGTCCTTTG
TGGACGAGGATCTGCACAACCTGAGGAAGCCCAAACCGTTCAAATTGGGC
CAGTTCTTATATAACACCGAGGATGGAACGGTTATGGGTCGCGATCGATC
GTCATGGGCCAAAATCGGAATCTTCTATGTGGCCTTCTACGGAGTCCTAG
CCGCCCTCGTTGCCATCTGCATGTGGGCCTTCTTCCAAACTCTCGATCCT
CGCATTCCCAAGTGGACCCTGGACCGTTCCCTGATAGGTACAAATCCAGG
TCTAGGTTTTCGACCCCTGCCACCGGTGGACAATGTGGAAAGCACTTTGA
TCTGGTACAAGGGCACCCAACACGAGAACTACAAGCACTGGACAGACTCC
CTGGATGATTTCCTTGCGGTGTACAAAGTACCTGGTCTAACACCCGGCCG
TGGTCAGAACATCTACAACTGCGACTACAACCAGCCGCCGCCAAAGGGTC
AGGTGTGCGACGTGGACATCAAGACGTGGTCGCCGTGCACCAAGGAGAAT
AACTACAGCTACCACAAGAGTGCGCCGTGTATCTTCCTCAAGCTGAACAA
GATCTACGGCTGGATTCCGGAGTACTACAACAGATCGAATGACTTGCCCG
CGAACATGCCCGCCAGCTTGAAGACCTACATCGCAGAGGTCGAGAAGACG
CAGCCAGAAAAGCTAAACACCATTTGGGTATCGTGCGAGGGCGAGAACCC
AGCCGACCAGGAGAACATTGGTGCTGTCAACTACCTGCCAATCAGGGGAT
TCCCCGGCTACTTCTATCCCTACCAGAACTCCGAGGGCTACTTGAGTCCC
CTGGTGGCGGTGCACTTCCAGCGCCCCAAACGCGGAATCATCATCAACGT
GGAGTGCAGGGCTTGGGCTCGCAACATCATACACGATCGCAAGGAGAGAA
TCGGATCGGTGCACTATGAGCTCCTCATTGATTAAAAGCTTTCTAGACCA
T
BS29776.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:25:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nrv2-RE | 969 | CG9261-PE | 1..969 | 17..985 | 4845 | 100 | Plus |
| nrv2-RA | 969 | CG9261-PA | 1..969 | 17..985 | 4845 | 100 | Plus |
| nrv2-RD | 969 | CG9261-PD | 1..969 | 17..985 | 4845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:25:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nrv2-RE | 1949 | CG9261-RE | 110..1081 | 15..986 | 4860 | 100 | Plus |
| nrv2-RA | 1980 | CG9261-RA | 141..1112 | 15..986 | 4860 | 100 | Plus |
| nrv2-RD | 2156 | CG9261-RD | 317..1288 | 15..986 | 4860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:25:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6791031..6791328 | 712..415 | 1475 | 99.7 | Minus |
| 2L | 23513712 | 2L | 6790798..6790969 | 882..711 | 860 | 100 | Minus |
| 2L | 23513712 | 2L | 6791699..6791842 | 301..158 | 720 | 100 | Minus |
| 2L | 23513712 | 2L | 6793228..6793371 | 158..15 | 720 | 100 | Minus |
| 2L | 23513712 | 2L | 6791518..6791640 | 419..297 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 6790638..6790742 | 986..882 | 525 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 11:25:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 925..961 | 874..909 | 119 | 83.8 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 4633..4686 | 260..207 | 117 | 68.5 | Minus |
BS29776.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:30 Download gff for
BS29776.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv2-RE | 108..1074 | 17..983 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:25 Download gff for
BS29776.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv2-RD | 319..1285 | 17..983 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:42:39 Download gff for
BS29776.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv2-RD | 319..1285 | 17..983 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:42:39 Download gff for
BS29776.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6791701..6791841 | 159..299 | 100 | <- | Minus |
| 2L | 6793228..6793369 | 17..158 | 100 | | Minus |
| 2L | 6790641..6790742 | 882..983 | 100 | <- | Minus |
| 2L | 6790799..6790967 | 713..881 | 100 | <- | Minus |
| 2L | 6791031..6791323 | 420..712 | 100 | <- | Minus |
| 2L | 6791518..6791637 | 300..419 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:25 Download gff for
BS29776.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6790641..6790742 | 882..983 | 100 | <- | Minus |
| arm_2L | 6790799..6790967 | 713..881 | 100 | <- | Minus |
| arm_2L | 6791031..6791323 | 420..712 | 100 | <- | Minus |
| arm_2L | 6791518..6791637 | 300..419 | 100 | <- | Minus |
| arm_2L | 6791701..6791841 | 159..299 | 100 | <- | Minus |
| arm_2L | 6793228..6793369 | 17..158 | 100 | | Minus |
BS29776.pep Sequence
Translation from 16 to 984
> BS29776.pep
MSKPVPMSPSFVDEDLHNLRKPKPFKLGQFLYNTEDGTVMGRDRSSWAKI
GIFYVAFYGVLAALVAICMWAFFQTLDPRIPKWTLDRSLIGTNPGLGFRP
LPPVDNVESTLIWYKGTQHENYKHWTDSLDDFLAVYKVPGLTPGRGQNIY
NCDYNQPPPKGQVCDVDIKTWSPCTKENNYSYHKSAPCIFLKLNKIYGWI
PEYYNRSNDLPANMPASLKTYIAEVEKTQPEKLNTIWVSCEGENPADQEN
IGAVNYLPIRGFPGYFYPYQNSEGYLSPLVAVHFQRPKRGIIINVECRAW
ARNIIHDRKERIGSVHYELLID*
BS29776.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nrv2-PE | 322 | CG9261-PE | 1..322 | 1..322 | 1782 | 100 | Plus |
| nrv2-PA | 322 | CG9261-PA | 1..322 | 1..322 | 1782 | 100 | Plus |
| nrv2-PD | 322 | CG9261-PD | 1..322 | 1..322 | 1782 | 100 | Plus |
| nrv2-PG | 323 | CG9261-PG | 22..323 | 21..322 | 1589 | 94.7 | Plus |
| nrv2-PF | 323 | CG9261-PF | 22..323 | 21..322 | 1589 | 94.7 | Plus |
