BS29777.complete Sequence
1211 bp assembled on 2012-05-24
GenBank Submission: KX800871
> BS29777.complete
GAAGTTATCAGTCGACATGGCTGACGCCGCCCACCAGGAGTTCGCCCGCC
GGCTGGCCCTTTTCTCTATCAACGTGTACGGCAAGCTGTCGGGGCAGAAG
CCCGGCGAGAACATCGTCTTCTCGCCCTTTTCCATCCAGACTTGTGCGGC
GATGGCCAGGCTGGGTGCAGAAAACGAGACGGCTACCCAGCTGGACCAGG
GACTGGGCTTGGCCTCTAGTGACCCAGAGCAAATCGCACACAGTTTTCAC
CAGGTGCTGGCCGCCTACCAGGACAGTCAGATCTTGCGCATCGCCAACAA
GATTTTCGTCATGGATGGCTACCAGCTGCGCCAGGAGTTTGATCAGCTGT
TATCCAAGCAGTTCCTCTCGGCGGCTCAGAGCGTGGACTTTTCCAAAAAT
GTACAAGCAGCGGCCACCATCAACAATTGGGTTGAGCAGCGCACCAACCA
TCTGATCAAGGACCTTGTGCCGGCTGATGTATTGAACTCCGAATCGCGAC
TCGTCCTTGTGAACGCCATTCACTTCAAGGGCACCTGGCAGCACCAGTTC
GCCAAACACTTAACCCGCCCAGACACCTTTCACCTGGATGGGGAGCGAAC
AGTTCAGGTTCCGATGATGAGTTTAAAGGAGCGGTTCCGCTACGCCGATC
TGCCGGCGCTAGATGCCATGGCTCTGGAACTGCCCTACAAGGACTCAGAC
CTCTCTATGCTGATCGTACTGCCCAACACCAAGACGGGTCTGCCCGCTCT
GGAGGAGAAGTTGCGCCTCACGACCCTCTCGCAGATCACGCAGTCGTTGT
ACGAAACAAAGGTAGCGCTCAAATTGCCCAGGTTCAAGGCAGAGTTCCAA
GTGGAATTGTCTGAGGTTTTCCAGAAGCTGGGCATGTCAAGGATGTTCTC
CGATCAGGCTGAATTTGGAAAAATGCTACAAAGTCCGGAGCCATTGAAAG
TGTCAGCCATCATACACAAGGCCTTCATTGAAGTCAACGAGGAGGGAACG
GAGGCTGCGGCCGCCACGGGCATGGCGGTGCGTAGGAAGCGCGCTATTAT
GTCGCCTGAGGAACCAATTGAGTTCTTTGCCGACCATCCTTTCACCTATG
TCCTTGTGCATCAGAAGGATCTGCCATTGTTTTGGGGCTCAGTTGTGCGG
CTCGAGGAAAATACCTTCGCCTCCAGCGAGCATGATGAGCTGTGAAAGCT
TTCTAGACCAT
BS29777.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:25:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RB | 1275 | CG9453-PB | 96..1275 | 16..1195 | 5900 | 100 | Plus |
| Spn42Da-RA | 1179 | CG9453-PA | 1..1179 | 17..1195 | 5895 | 100 | Plus |
| Spn42Da-RF | 1236 | CG9453-PF | 96..1105 | 16..1025 | 5035 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RA | 1505 | CG9453-RA | 274..1453 | 16..1195 | 5900 | 100 | Plus |
| Spn42Da-RB | 1385 | CG9453-RB | 154..1333 | 16..1195 | 5900 | 100 | Plus |
| Spn42Da-RL | 2155 | CG9453-RL | 640..1649 | 16..1025 | 5035 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:25:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6877427..6878288 | 877..16 | 4310 | 100 | Minus |
| 2R | 25286936 | 2R | 6876947..6877123 | 1195..1019 | 885 | 100 | Minus |
| 2R | 25286936 | 2R | 6877220..6877364 | 1020..876 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:25:06 has no hits.
BS29777.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:31 Download gff for
BS29777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn4-RA | 275..1452 | 17..1194 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:26 Download gff for
BS29777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RB | 155..1332 | 17..1194 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:42:41 Download gff for
BS29777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RB | 155..1332 | 17..1194 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:42:41 Download gff for
BS29777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6876948..6877122 | 1020..1194 | 100 | <- | Minus |
| 2R | 6877221..6877362 | 878..1019 | 100 | <- | Minus |
| 2R | 6877427..6878287 | 17..877 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:26 Download gff for
BS29777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2764453..2764627 | 1020..1194 | 100 | <- | Minus |
| arm_2R | 2764726..2764867 | 878..1019 | 100 | <- | Minus |
| arm_2R | 2764932..2765792 | 17..877 | 100 | | Minus |
BS29777.pep Sequence
Translation from 16 to 1194
> BS29777.pep
MADAAHQEFARRLALFSINVYGKLSGQKPGENIVFSPFSIQTCAAMARLG
AENETATQLDQGLGLASSDPEQIAHSFHQVLAAYQDSQILRIANKIFVMD
GYQLRQEFDQLLSKQFLSAAQSVDFSKNVQAAATINNWVEQRTNHLIKDL
VPADVLNSESRLVLVNAIHFKGTWQHQFAKHLTRPDTFHLDGERTVQVPM
MSLKERFRYADLPALDAMALELPYKDSDLSMLIVLPNTKTGLPALEEKLR
LTTLSQITQSLYETKVALKLPRFKAEFQVELSEVFQKLGMSRMFSDQAEF
GKMLQSPEPLKVSAIIHKAFIEVNEEGTEAAAATGMAVRRKRAIMSPEEP
IEFFADHPFTYVLVHQKDLPLFWGSVVRLEENTFASSEHDEL*
BS29777.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-PA | 392 | CG9453-PA | 1..392 | 1..392 | 1982 | 100 | Plus |
| Spn42Da-PB | 424 | CG9453-PB | 33..424 | 1..392 | 1982 | 100 | Plus |
| Spn42Da-PG | 379 | CG9453-PG | 1..379 | 1..379 | 1755 | 92.3 | Plus |
| Spn42Da-PD | 411 | CG9453-PD | 33..411 | 1..379 | 1755 | 92.3 | Plus |
| Spn42Da-PL | 379 | CG9453-PL | 1..376 | 1..376 | 1740 | 91.8 | Plus |
