Clone BS29778 Report

Search the DGRC for BS29778

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:297
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG9410-RB
Protein status:BS29778.pep: full length peptide match
Sequenced Size:761

Clone Sequence Records

BS29778.complete Sequence

761 bp assembled on 2012-05-24

GenBank Submission: KX803550

> BS29778.complete
GAAGTTATCAGTCGACATGCTAAAGGGTAGCACACTGAAAGCCCTGGACG
TCAGAATCCTATGGCCCCTTATTGAAACAAGGTCAGCAGGTAAATGTAAA
TTACATAACCCGAGGCCGACTCCAAACCGTAACATTGCGGCAGCAAAATT
GATCGTGACACTCAGATTGCTCTTATCCTGTTGCAGTGGAGGACACCAGC
GCAGCTTCTCCAGCAGCACCCACCGGTCCTACATAACATTCAATGATTTC
CGCAAAAAACACCGCTGGTACACAAAAAAGGAGCTTGTGGGCTACTCCAT
GCAGGACATGTACAGCGTGGTTTCCGACGTCAGCAATTACCACAAGTTCG
TGCCGTATGTGAAGCGCTCCGATGTGCACAGCCGGGGAAGTGAGGGCTTC
AAGGCGGACCTCATTGTTGGCTTTCCGCCGCTTAACGAGGCCTACACCTC
GCAGGTGACCCTGGTGCCGCCCAGCTTGGTTAAGTCAGAGTGCCACGATG
GACGTCTGTTCAACTACCTCCTGAATGAGTGGTCTTTTAAGCCGGGCCTC
AAGGACATACCTAACTCCTGCGTGCTGGACTTCAAGGTATCGTTCGAGTT
CAAGTCCCTCCTGCACAGCAACGTCGCCAACATATTTTTTGACCTTATCT
GCGATCAAATGGAAAACGCTTTTATCCAGGAGGTCCGTCGACGGAGTGGT
CCGCCCTCAATCCGCTCCCACGTGCTTACTTCGGATCGGTCCTGAAAGCT
TTCTAGACCAT

BS29778.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9410-RB 729 CG9410-PB 1..729 17..745 3645 100 Plus
CG9410-RA 624 CG9410-PA 64..624 185..745 2805 100 Plus
CG9410-RE 123 CG9410-PE 1..73 17..89 365 100 Plus
CG9410-RA 624 CG9410-PA 1..65 17..81 325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9410-RB 930 CG9410-RB 71..799 17..745 3645 100 Plus
CG9410-RE 833 CG9410-RE 140..702 183..745 2815 100 Plus
CG9410-RA 891 CG9410-RA 200..760 185..745 2805 100 Plus
CG9410-RE 833 CG9410-RE 71..143 17..89 365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6669491..6669945 291..745 2275 100 Plus
2R 25286936 2R 6669160..6669434 17..291 1375 100 Plus
Blast to na_te.dros performed on 2014-11-28 11:25:10 has no hits.

BS29778.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:32 Download gff for BS29778.complete
Subject Subject Range Query Range Percent Splice Strand
CG9410-RD 583..1310 17..744 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:28 Download gff for BS29778.complete
Subject Subject Range Query Range Percent Splice Strand
CG9410-RB 71..798 17..744 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:42:43 Download gff for BS29778.complete
Subject Subject Range Query Range Percent Splice Strand
CG9410-RB 71..798 17..744 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:42:43 Download gff for BS29778.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6669160..6669434 17..291 100 -> Plus
2R 6669492..6669944 292..744 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:28 Download gff for BS29778.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2556665..2556939 17..291 100 -> Plus
arm_2R 2556997..2557449 292..744 100   Plus

BS29778.pep Sequence

Translation from 16 to 744

> BS29778.pep
MLKGSTLKALDVRILWPLIETRSAGKCKLHNPRPTPNRNIAAAKLIVTLR
LLLSCCSGGHQRSFSSSTHRSYITFNDFRKKHRWYTKKELVGYSMQDMYS
VVSDVSNYHKFVPYVKRSDVHSRGSEGFKADLIVGFPPLNEAYTSQVTLV
PPSLVKSECHDGRLFNYLLNEWSFKPGLKDIPNSCVLDFKVSFEFKSLLH
SNVANIFFDLICDQMENAFIQEVRRRSGPPSIRSHVLTSDRS*

BS29778.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9410-PB 242 CG9410-PB 1..242 1..242 1278 100 Plus
CG9410-PA 207 CG9410-PA 1..207 1..242 1047 85.5 Plus