BS29794.complete Sequence
1550 bp assembled on 2012-06-18
GenBank Submission: KX800891
> BS29794.complete
GAAGTTATCAGTCGACATGGAAACGGAGTCTCTGAACCGCAAGAACTCCT
CGCGGAAGAGTTCAATCGTGAATGGGAATGGAGATGCCTCTGCCAAGTTG
ACCAACGGCGATGGAGATGGAGGCGGAGACGGAGGCGGAGAGGTGACTCT
GAAGGCCAAGATGAGCCTGCTCAATGGATGCACCGTCATAGTGGGCTCCA
TCATCGGATCGGGCATCTTTGTATCGCCCACGGGAGTGCTGATGTACACG
GGCAGTGTCAACCTGGCCCTCATCGTTTGGGTCATTTCCGGCCTTTTCTC
GATGGTGGGTGCCTACTGCTATGCGGAGTTGGGAACGATGATCACCAAGT
CGGGTGCTGATTACGCATACATCATGGAGACTTTCGGACCCTTCATGGCC
TTCATCCGACTCTGGATCGAGTGCATGATCGTGCGACCCTGCTCCCAGGC
CATCGTAGCCCTCACCTTCAGTACCTACGTCCTGAAGCCCTTCTTCCCGG
AGTGCACTCCTCCGGAGGACTCGGCCCGCCTGCTAGCCGTCTGTTGCATC
CTTGTGCTAACCCTAATCAACTGCTGGGACGTAAAATGGGCGACCGCTGT
GCAGGATATCTTTACATATGCGAAACTGCTGGCCCTGTTTATCATCATTG
CCACTGGCGTTTACCAACTTTACCTCGGCAACACGCAATACTTTACGTTT
GAGAATACGGACACGAAAGTGACCTCCATCGCGCTGTCCTTCTACTCCGG
TCTGTTTGCCTACAACGGATGGAATTACTTGAACTTCATCATTGAGGAGC
TGAAGGATCCCGTCAAGAATCTGCCCCGCGCCATCGCCATCAGTTGCACC
CTGGTGACCATTGTCTATGTCATGGCGAATGTATCCTTCTACACCATCCT
GTCGCCGGATGAGGTCATGGGCTCCTCGGCCGTGGCGGTGACCTATGCGG
AGCGGGCCTTCGGCATGCTGGCCTGGACCATTCCAGTTTTTGTGGCCTTG
TCTACGTTTGGAGCAGTGAACGGCATTCTGCTGACCTCCTCCCGACTCTT
CTACGCCGGAGCCAACAACGGCCAGATGCCCGAGATCCTCACCATGATCC
AGATCCAGAGATTCACACCCACTCCCGCGGTTTTGGCCATGGCGCTTCTA
TCGATGTTGTACCTCACCGTTTCGGACATCTTTGCTCTGATTAACTACGT
CGGCTTTGCCACTTGGTTGAGTATCGGTGTGGCTGTATTGTGCCTGCCTT
GGCTGAGATGGGCCCAACCCAATCTGCCACGTCCCATCCGAGTGCCCATG
GTGTTCCCCATTGTCTACCTTATTGCCACCATATTCGTGACCGTGGTGCC
CATGTACGCCAGTCCGGTGGAGACTGGATACGGCATCCTTATGATCCTGT
CCAGTATACCCGTCTACCTGGTGTTCATCGCCTGGAAGAACAAGCCCATT
TGGTTCCAGAAGACTATGGGCGGACTGACACAAGTTCTGCAGAAACTGAT
GATGGTTGTGCGTCCAAAAGCGGCGTCAAAGTAAAAGCTTTCTAGACCAT
BS29794.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1607-RB | 1518 | CG1607-PB | 1..1518 | 17..1534 | 7590 | 100 | Plus |
| CG1607-RA | 1518 | CG1607-PA | 1..1518 | 17..1534 | 7590 | 100 | Plus |
| CG1607-RD | 1524 | CG1607-PD | 1..1490 | 17..1506 | 7270 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1607-RB | 2956 | CG1607-RB | 136..1654 | 16..1534 | 7595 | 100 | Plus |
| CG1607-RA | 3082 | CG1607-RA | 262..1780 | 16..1534 | 7595 | 100 | Plus |
| CG1607-RD | 3020 | CG1607-RD | 262..1752 | 16..1506 | 7275 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:35:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31387110..31387405 | 16..311 | 1465 | 99.7 | Plus |
| 3R | 32079331 | 3R | 31389941..31390199 | 1212..1470 | 1280 | 99.6 | Plus |
| 3R | 32079331 | 3R | 31387933..31388180 | 304..551 | 1240 | 100 | Plus |
| 3R | 32079331 | 3R | 31389654..31389894 | 982..1222 | 1190 | 99.6 | Plus |
| 3R | 32079331 | 3R | 31389380..31389595 | 771..986 | 1080 | 100 | Plus |
| 3R | 32079331 | 3R | 31389169..31389315 | 626..772 | 735 | 100 | Plus |
| 3R | 32079331 | 3R | 31389037..31389110 | 552..625 | 370 | 100 | Plus |
| 3R | 32079331 | 3R | 31390297..31390359 | 1469..1531 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:35:18 has no hits.
BS29794.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-18 13:51:01 Download gff for
BS29794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1607-RB | 136..1651 | 17..1532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:37 Download gff for
BS29794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1607-RA | 263..1778 | 17..1532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:47:18 Download gff for
BS29794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1607-RA | 263..1778 | 17..1532 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:47:18 Download gff for
BS29794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31387111..31387398 | 17..304 | 100 | -> | Plus |
| 3R | 31387934..31388180 | 305..551 | 100 | -> | Plus |
| 3R | 31389037..31389110 | 552..625 | 100 | -> | Plus |
| 3R | 31389169..31389314 | 626..771 | 100 | -> | Plus |
| 3R | 31389381..31389595 | 772..986 | 100 | -> | Plus |
| 3R | 31389659..31389888 | 987..1216 | 100 | -> | Plus |
| 3R | 31389946..31390198 | 1217..1469 | 100 | -> | Plus |
| 3R | 31390298..31390359 | 1470..1532 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:37 Download gff for
BS29794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27212833..27213120 | 17..304 | 100 | -> | Plus |
| arm_3R | 27213656..27213902 | 305..551 | 100 | -> | Plus |
| arm_3R | 27214759..27214832 | 552..625 | 100 | -> | Plus |
| arm_3R | 27214891..27215036 | 626..771 | 100 | -> | Plus |
| arm_3R | 27215103..27215317 | 772..986 | 100 | -> | Plus |
| arm_3R | 27215381..27215610 | 987..1216 | 100 | -> | Plus |
| arm_3R | 27215668..27215920 | 1217..1469 | 100 | -> | Plus |
| arm_3R | 27216020..27216081 | 1470..1532 | 98 | | Plus |
BS29794.pep Sequence
Translation from 16 to 1533
> BS29794.pep
METESLNRKNSSRKSSIVNGNGDASAKLTNGDGDGGGDGGGEVTLKAKMS
LLNGCTVIVGSIIGSGIFVSPTGVLMYTGSVNLALIVWVISGLFSMVGAY
CYAELGTMITKSGADYAYIMETFGPFMAFIRLWIECMIVRPCSQAIVALT
FSTYVLKPFFPECTPPEDSARLLAVCCILVLTLINCWDVKWATAVQDIFT
YAKLLALFIIIATGVYQLYLGNTQYFTFENTDTKVTSIALSFYSGLFAYN
GWNYLNFIIEELKDPVKNLPRAIAISCTLVTIVYVMANVSFYTILSPDEV
MGSSAVAVTYAERAFGMLAWTIPVFVALSTFGAVNGILLTSSRLFYAGAN
NGQMPEILTMIQIQRFTPTPAVLAMALLSMLYLTVSDIFALINYVGFATW
LSIGVAVLCLPWLRWAQPNLPRPIRVPMVFPIVYLIATIFVTVVPMYASP
VETGYGILMILSSIPVYLVFIAWKNKPIWFQKTMGGLTQVLQKLMMVVRP
KAASK*
BS29794.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:04:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1607-PB | 505 | CG1607-PB | 1..505 | 1..505 | 2601 | 100 | Plus |
| CG1607-PA | 505 | CG1607-PA | 1..505 | 1..505 | 2601 | 100 | Plus |
| CG1607-PD | 507 | CG1607-PD | 1..498 | 1..498 | 2535 | 98.6 | Plus |
| CG1607-PC | 507 | CG1607-PC | 1..498 | 1..498 | 2535 | 98.6 | Plus |
| mnd-PD | 499 | CG3297-PD | 21..477 | 26..483 | 1180 | 48.4 | Plus |
