BS29795.complete Sequence
4574 bp assembled on 2012-10-24
GenBank Submission: KX800903
> BS29795.complete
GAAGTTATCAGTCGACATGTCGCTGCCTCCCGAGGACACCGATTTGTCCA
CAAATTCCGCATACGAATCCGCACTCCAAATCGCGAGCAATGTGTCGGCA
GCACGAGTAGTCGGTTCGGCAGTAGGACAGCGATTTTCGCCGTCGCCAGC
AGCTCACCCGAACGTGATTGAGCGCGTCGCGTCTCATGTGGACTCACGCC
GCAGCACGTTTCCAAGTTGGGGTAATCCGTCAGTAGCGCCAAGAGGATCG
GAAGAAGCAGCAGCCAACGCCACAGCAACACAACTCCTATGGGCGGAGAA
CCAAGGTCTCCCGACATCGCACTTATTGCCAACTGAACAGGCATTCGAGA
CATTGAACACTAATGCGTATTGTTCCCCGCCAGGGGATTCACGATTTACG
TTCCCTAGCCAGAACTACTCGCCGCTGCTGCCGCGGTGTGTCCCAGTTCC
GAATCAGCGTTACTCTCCAGATGGATCGCCAATACATCAACTCCATGAGC
TGCAAAATTGTCCATTGATAGATTCGCCGATAAGACTGCGATTTCCATCC
CCCTTGCCAGAACCACCATCACTACCGACCATCACCCTTACAGTTGATGC
CCTGATCGATCTTGACCAAAACAACCAGGTCGCATATTATGTCCAGCAGT
ACAACAATCAGCCAGTCCTATATCAACAAAACATTCATATAGGAACGGGA
ATCCAACTATGCGATCAGGCCTCCGAGAATAATCAACCGATTATATTACA
TATCGTGGAGCACAATCCCCAGACTATAACTGAGAGCCAGGAGCAATTCC
ACCAGGTTGTCCCCGAAATTCAAATCAATAATATCCAGGAGCAAGATCAG
AAATTTGAAAATGGCATCTCGGAACAAAATCATCCGATTGCAACTGAGGC
TCAGGATCAGACTTTAACTGAGATCCGGGATGAAAACCAGATTGTCCTTG
CAGTCCAAGAAAAAAATCTCACGCGTGCCTCTGAGATTCAGGACCAGAAC
CAACAGACATTAACCGAGATCCCAGAGAAATGTCTTCAGATTGCATCTCC
TGTCACTACTGATATACAGGTACAAAGTCCTCAGGTTGTAATAGAGATCC
AGGAGCAAAATCACCAGTCTGTAACGGAGATCCAGGAGGAAGTTCACCAG
ACTGCCCCCGAAATCCAAGTGAACGTTTTCCAGACCTCGTCTGATATTCA
AGGGCAAAATCACCAGATTGTAACTGAAGAGCAAAATCATCAGACTATAA
CCGAGACCCAGGAGGATTACTCGGCTGTCTCCGAAATCCAATGGGAAAAT
CTCTCGTTTTCTGCTGAGATTCAGGAGCAAAACCAGCAGATCGTAACCGA
AGTTACGAAGCTTGCATCTCCTTCTGTTACTGATATACAGGCACAAAGTC
CTCAGTCCGTAATCGAGATCCAGGATGACGATGATGAAGATCTAAAGTTC
GAATCTGATGATCTGCACACTATACCTGAAATCCAGGAGAAAAACCAACA
AAGTCCTCAGTTCGTAATCGAGATCCATTATGATAATGAAGATCTAAAGT
TCGCATCTGATAATCAGGAGCAAGATCAACAAACAGCCGAGCTCCAAAAG
GAAAGGTTCCAGTTCGCATCTGAAATCGAGAAGCGAGATCTGCAGATTGT
TACTGACACTCACAAACAAAATTATCACAATGTAACCGACATCCCGTTCG
CAACATACATCCAGGAGGAAAACGAGCAGTTAACACCGGAAGACCAAGAG
GAAGATCAACATTACCTGAATTTTGAGGGGAACCAACAATTCCAGCTCCA
GAAGCAAGATCAGCTGAGTGTACCACAGATCCAGAAGCAAACCCACCAGT
TCGAATCTAAGGTCAAAAAGAGAAAGTTGCAGCCCTTTTCTGAATACCAG
CAGAAAGGTCAGAAAGATCATATCCAAGAGAGGCAGTATATTCAGCAGGA
ATTCACCATCCACTCTAACCAGGCTTATTCTAAGGTCCAGTATATACAAA
CTATACAAACTGCGACTCCGTACGTACCTCAATTGGAAATATCCCAGGAA
AACAGTTTTGAGGTTCAACCAGCATACGAGGTAAACGAAGGCCAACGGGA
CAGAGAACTGGTTAGTTACACAGGCCACGAGCATCAGAACTTTGTTGATG
AGGTCTCGACACCATTACCGCCCGCTGAAGCTCAACCAGGATCTACTTCA
GAAGATATATCAGACCCCGTTTCACCTGAACATTGGGAGCAGCTAGAGTC
ACTCGATCCGAGCACTATTTGTATTCGCAAAACCTTCAATCTAATTCGCG
ATATCTCTGAAAGTCTGGTGGCCGATCCAGAGCAACCCGAAGCCGAAGCC
CACCGGAAGTCAATTTTCCTTCTCCGCCAGAAGCTAGCCGATGTGTGCCA
TAAGGTTCTAACCGAAATTATACACGGCCGGGCCACCGATGAGATCATCT
CCATTCTGAGAGAGATTCTCGAGCAAACTAAGGAAATACCTCCACGCCCC
ACGCCGAAAAGAGACCTCCAAGAAGACATTTCGATGGGCTTAGAAATATT
AAAAAAGATCCGTGGTATGCTATCCGGTTGGTATTCTTCCAGAGAAAGCG
AAACGGACTCCACGGATACCGGAACGGGATTCCAGGCTCAAAACGGAAAA
GGTTTTGGTGCCGGCCGCCAGCCGGAAAATAGTTTTTTATCCCAGAAAAG
ACGCAACCAAGAAGAGAACCCTCGTCTGATCAAGTACCGGCGTGTGGACA
ACAGCTTTCCCCGCTTGATAACGAATGAGACGGCCGAGGACCTGATTCCC
AACAATTCGATGGCCAAGCGGGATCAGCCCCAGAGCTCAAAGCGGCTCTC
AATATTTAATCCGCCGGTATACACGCAGCACCGAGTGCGCAATGATGCCC
CCCACGTACCTACGCCATTTGACGATGAGGAGTCGTCACAGAGACTTGCT
AACGCGGGCCCATCATCCAGGCCCATGACTTACTCGGATGCGGTGCGTCT
AGGCCATAATGGCATCTCCGAGTCGCGCGTAAATGGGCACTCCAGCCATA
CGGTGCGCAGAGAACCGTCTCGGCTGCACAGAAGCATTCTGTCCCACGAG
ATGAACTGCAAGGATCAAGAGCAGTATAACGAACTTATCCGTACCCAAAC
AAATTACGTGGGCAGTCGCTACCTCAAGCCGGGTACCCCGCCAACGTTTC
AGCGGGCTAAAGCCCAGTCGGCAACCAGTAGCAGCTGCTCACTGCAAGAC
AACCAATCGAATATAACAGATTCGTTCCCGTCGCCACATGGCCGTGCGAA
CCCTGAGCTAACGGAGTACGCCAAATTGATCAACCGCCAGGAGAATGAGG
AGAACAGGTCTCCGGCACCACAGCAGCCAAAGCGAAACGCTAGCAATAGC
TCTGCCAGCCATGCGTCCACTATTTCCAGCAGCGCATCTTCCTCCTGCAG
CACTTGTTCAACTTGCTCATCTTCTGACACTGAGCCAATGTTGGTTAAAG
ATAGCCCGGAGGTCAAGGAAGCCAACGAAGCCAACGAGGCCAACGAAGCC
AACGAAGCCAACGAAACCAAGGAAAATGACGCACCTCAACCTACAACTAC
CAGAATCAAGAAACCAGACTTCTTGCACCGTCGCTTTGCCAACTGTATCT
TTCTAAGGAATGACTTTGCGGAAAATTTCAAAGCAAGAGCGAATCGCCGG
CAACTTGAATCCATGCATCTTCTTGGAATAGCTGAACAGCAGGCTAATGA
AAGCAAAGATGAACGCCTTGCCTATGAAAAAAAGCTGCGGGAAGTCATGT
TCCGGTCTGGTGCTCCCCACCGGCCCTTTTTTGAAATCGGGCCCCTGGAA
CAGCCGGAAGAGAAGAAAGAGACCAAGCTCATTCCGCTAACAAAGGAGGA
CCACGCTCGCTTTCAAGAAATGACAACTATTGAGGTTACGACGAACTTAA
TTTTCAAATATAACCTACAAATAACTACCGACGACATATTCACGTTTGTT
GATGGCGAATGGCTTAACGACGCGATCATCAACTTTTACATGTCCATGCT
GACGGAACGCTCGGAGAAGCGAGCTGGCGAACTTCCCGCCACTTACGCCA
TGAACACATTCTTCATGCCCCGTCTCCTGCAAGCTGGGTATGCAGGCGTT
AGGCGCTGGACTCGCAAAGTGGACTTGTTCAGCAAGGACATAATACCGGT
GCCAGTGCACTGCGGCAACGTCCACTGGTGCATGGCCATCATACACTTGC
GTAACAAGACAATCTTCTATTACGACTCAATGGGAAGACCAAACCAACCG
GCGCTTGATGCTCTAGTTAAATATCTGCACGAAGAGTCACTAGACAAGCG
CAAACAGCCGTTTGATATGACCGGTTTCGTTGTCGAGAACGCGCAGAATA
TACCACGTCAAGGGAATAGCAGCGATTGCGGTGTCTTCAGCTGCATGTTC
GCCGAGTATATAACGCGTGATGTTCCGATTACCTTCTCCCAGGCGGAAAT
GTTGTACTTCCGCACGAAGATGGCCCTGGAAATCGCCGACGGAAAGTTGT
GGCAGTAGAAGCTTTCTAGACCAT
BS29795.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:57:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ulp1-RA | 4542 | CG12359-PA | 1..4542 | 17..4558 | 22710 | 100 | Plus |
| CG11023-RC | 1443 | CG11023-PC | 648..1442 | 3757..4551 | 1980 | 83.3 | Plus |
| CG11023-RC | 1443 | CG11023-PC | 1..348 | 2810..3145 | 760 | 81.9 | Plus |
| CG11023-RD | 819 | CG11023-PD | 1..348 | 2810..3145 | 760 | 81.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ulp1-RA | 5498 | CG12359-RA | 187..4729 | 16..4558 | 22715 | 100 | Plus |
| CG11023-RC | 1802 | CG11023-RC | 799..1602 | 3757..4560 | 2010 | 83.3 | Plus |
| CG11023-RD | 1844 | CG11023-RD | 1034..1644 | 3950..4560 | 1825 | 86.6 | Plus |
| CG11023-RC | 1802 | CG11023-RC | 45..499 | 2703..3145 | 1085 | 83.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19205073..19207760 | 2703..16 | 13440 | 100 | Minus |
| X | 23542271 | X | 19204064..19204937 | 3576..2703 | 4370 | 100 | Minus |
| X | 23542271 | X | 19202872..19203487 | 4558..3943 | 3080 | 100 | Minus |
| 2L | 23513712 | 2L | 8674..9284 | 3950..4560 | 1825 | 86.6 | Plus |
| 2L | 23513712 | 2L | 7573..8027 | 2703..3145 | 1085 | 83.1 | Plus |
| X | 23542271 | X | 19203566..19203767 | 3943..3742 | 1010 | 100 | Minus |
| X | 23542271 | X | 19203826..19203991 | 3742..3577 | 830 | 100 | Minus |
| 2L | 23513712 | 2L | 8403..8571 | 3757..3925 | 275 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:57:22 has no hits.
BS29795.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-24 12:43:09 Download gff for
BS29795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ulp1-RA | 185..4726 | 17..4558 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:51 Download gff for
BS29795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ulp1-RA | 185..4726 | 17..4558 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:17:51 Download gff for
BS29795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ulp1-RA | 188..4729 | 17..4558 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:17:51 Download gff for
BS29795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19202872..19203486 | 3944..4558 | 100 | <- | Minus |
| X | 19203566..19203767 | 3742..3943 | 100 | <- | Minus |
| X | 19203827..19203991 | 3577..3741 | 100 | <- | Minus |
| X | 19204064..19204936 | 2704..3576 | 100 | <- | Minus |
| X | 19205073..19207759 | 17..2703 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:51 Download gff for
BS29795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19096905..19097519 | 3944..4558 | 100 | <- | Minus |
| arm_X | 19097599..19097800 | 3742..3943 | 100 | <- | Minus |
| arm_X | 19097860..19098024 | 3577..3741 | 100 | <- | Minus |
| arm_X | 19098097..19098969 | 2704..3576 | 100 | <- | Minus |
| arm_X | 19099106..19101792 | 17..2703 | 100 | | Minus |
BS29795.pep Sequence
Translation from 16 to 4557
> BS29795.pep
MSLPPEDTDLSTNSAYESALQIASNVSAARVVGSAVGQRFSPSPAAHPNV
IERVASHVDSRRSTFPSWGNPSVAPRGSEEAAANATATQLLWAENQGLPT
SHLLPTEQAFETLNTNAYCSPPGDSRFTFPSQNYSPLLPRCVPVPNQRYS
PDGSPIHQLHELQNCPLIDSPIRLRFPSPLPEPPSLPTITLTVDALIDLD
QNNQVAYYVQQYNNQPVLYQQNIHIGTGIQLCDQASENNQPIILHIVEHN
PQTITESQEQFHQVVPEIQINNIQEQDQKFENGISEQNHPIATEAQDQTL
TEIRDENQIVLAVQEKNLTRASEIQDQNQQTLTEIPEKCLQIASPVTTDI
QVQSPQVVIEIQEQNHQSVTEIQEEVHQTAPEIQVNVFQTSSDIQGQNHQ
IVTEEQNHQTITETQEDYSAVSEIQWENLSFSAEIQEQNQQIVTEVTKLA
SPSVTDIQAQSPQSVIEIQDDDDEDLKFESDDLHTIPEIQEKNQQSPQFV
IEIHYDNEDLKFASDNQEQDQQTAELQKERFQFASEIEKRDLQIVTDTHK
QNYHNVTDIPFATYIQEENEQLTPEDQEEDQHYLNFEGNQQFQLQKQDQL
SVPQIQKQTHQFESKVKKRKLQPFSEYQQKGQKDHIQERQYIQQEFTIHS
NQAYSKVQYIQTIQTATPYVPQLEISQENSFEVQPAYEVNEGQRDRELVS
YTGHEHQNFVDEVSTPLPPAEAQPGSTSEDISDPVSPEHWEQLESLDPST
ICIRKTFNLIRDISESLVADPEQPEAEAHRKSIFLLRQKLADVCHKVLTE
IIHGRATDEIISILREILEQTKEIPPRPTPKRDLQEDISMGLEILKKIRG
MLSGWYSSRESETDSTDTGTGFQAQNGKGFGAGRQPENSFLSQKRRNQEE
NPRLIKYRRVDNSFPRLITNETAEDLIPNNSMAKRDQPQSSKRLSIFNPP
VYTQHRVRNDAPHVPTPFDDEESSQRLANAGPSSRPMTYSDAVRLGHNGI
SESRVNGHSSHTVRREPSRLHRSILSHEMNCKDQEQYNELIRTQTNYVGS
RYLKPGTPPTFQRAKAQSATSSSCSLQDNQSNITDSFPSPHGRANPELTE
YAKLINRQENEENRSPAPQQPKRNASNSSASHASTISSSASSSCSTCSTC
SSSDTEPMLVKDSPEVKEANEANEANEANEANETKENDAPQPTTTRIKKP
DFLHRRFANCIFLRNDFAENFKARANRRQLESMHLLGIAEQQANESKDER
LAYEKKLREVMFRSGAPHRPFFEIGPLEQPEEKKETKLIPLTKEDHARFQ
EMTTIEVTTNLIFKYNLQITTDDIFTFVDGEWLNDAIINFYMSMLTERSE
KRAGELPATYAMNTFFMPRLLQAGYAGVRRWTRKVDLFSKDIIPVPVHCG
NVHWCMAIIHLRNKTIFYYDSMGRPNQPALDALVKYLHEESLDKRKQPFD
MTGFVVENAQNIPRQGNSSDCGVFSCMFAEYITRDVPITFSQAEMLYFRT
KMALEIADGKLWQ*
BS29795.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ulp1-PA | 1513 | CG12359-PA | 1..1513 | 1..1513 | 7882 | 100 | Plus |
| CG11023-PC | 480 | CG11023-PC | 128..480 | 1169..1511 | 1156 | 62.6 | Plus |
| CG32110-PA | 411 | CG32110-PA | 111..411 | 1204..1513 | 717 | 47.1 | Plus |
| CG11023-PC | 480 | CG11023-PC | 1..132 | 932..1057 | 442 | 68.2 | Plus |
| CG11023-PD | 272 | CG11023-PD | 1..132 | 932..1057 | 442 | 68.2 | Plus |
| CG11023-PB | 284 | CG11023-PB | 1..132 | 932..1057 | 442 | 68.2 | Plus |
| CG11023-PD | 272 | CG11023-PD | 114..266 | 1166..1309 | 273 | 40.5 | Plus |
