BS29805.complete Sequence
980 bp assembled on 2012-08-30
GenBank Submission: KX805522
> BS29805.complete
GAAGTTATCAGTCGACATGTGGTTGCGAGACTTGCGCATTCGTCTAAGTT
TTTTCCACCTGATGGTGTGTCTGCCCAGTATTTACACAAATGTGCCAAGC
TATTCGGATCGGTACAACAGAAGGCCTGTGTCCCAGGATCCAGGAATGGG
AACCTATGGCCGCGGGTACATGGAAAACCGGCAGTTGTCCTATAATCGAC
CTGGACCAGCCAACTTCCAAGATCCCAGAAATGTGGAGTTGCAGCCGAAA
CGACGAGAGTATCTCATTCGATCACATGAAACGCAATCCGATAGGGGGCA
ACACAAATGCCGCATTTGGGTGCCCCCCGATACGGTGGAAAAGTACTCGT
ACCCCAGTGTCATCCAGACGGACCAGGCCAACCGGCTGTCCCTGATCGAG
GTCTGCTGCACCGGATACTCGGCCAGTCGTCTGATGGGCGTAACCGTGTG
CCGGGCGCAATGTGGCTGCCAGAACGGAAGCTGTAAGATTCCTGGTGAGT
GCGAGTGCTATGATGGCTTTGTGCGTAACGACAACGGTGACTGTGTGTTT
GCCTGCCCGCTGGGCTGCCAAAATGGTCAGTGCTATCTGGACGGCAGCTG
TCAGTGTGATCCGGGCTACAAGCTGGACGAGACGCGACGCTTCTGCCGCC
CGATCTGCAGCAGTGGCTGTGGCAGCAGTCCGCGGCACAACTGCACCGAA
CCGGAGATCTGTGGCTGCTCCAAGGGCTATCAGCTGACCGACGACGGATG
CCAGCCCGTCTGCGAACCGGACTGTGGAATCGGCGGACTCTGCAAGGACA
ACAACCAGTGCGACTGCGCTCCTGGTTACAATCTGAGGGATGGTGTCTGC
CAGGCCGATTGCTATCAGAAGTGCAACAATGGCGTGTGTGTCAGCCGAAA
CCGATGTCTATGCGATCCGGGATATACCTACCATGAGCAATCAACCATGT
GCGTTCCAGTATAGAAGCTTTCTAGACCAT
BS29805.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimB5-RC | 948 | CG16873-PC | 1..948 | 17..964 | 4740 | 100 | Plus |
| NimB5-RB | 948 | CG16873-PB | 1..948 | 17..964 | 4740 | 100 | Plus |
| NimB5-RA | 948 | CG16873-PA | 1..948 | 17..964 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:52:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimB5-RC | 1395 | CG16873-RC | 112..1060 | 17..965 | 4745 | 100 | Plus |
| NimB5-RB | 1335 | CG16873-RB | 52..1000 | 17..965 | 4745 | 100 | Plus |
| NimB5-RA | 1141 | CG16873-RA | 52..1000 | 17..965 | 4745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:52:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13971139..13971682 | 325..868 | 2720 | 100 | Plus |
| 2L | 23513712 | 2L | 13970559..13970866 | 17..324 | 1540 | 100 | Plus |
| 2L | 23513712 | 2L | 13971741..13971838 | 868..965 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:52:53 has no hits.
BS29805.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-30 10:58:10 Download gff for
BS29805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nimB5-RB | 31..978 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:35 Download gff for
BS29805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimB5-RA | 52..999 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:15:55 Download gff for
BS29805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimB5-RA | 52..999 | 17..964 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:15:55 Download gff for
BS29805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13970559..13970866 | 17..324 | 100 | -> | Plus |
| 2L | 13971139..13971681 | 325..867 | 100 | -> | Plus |
| 2L | 13971741..13971837 | 868..964 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:35 Download gff for
BS29805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13970559..13970866 | 17..324 | 100 | -> | Plus |
| arm_2L | 13971139..13971681 | 325..867 | 100 | -> | Plus |
| arm_2L | 13971741..13971837 | 868..964 | 100 | | Plus |
BS29805.pep Sequence
Translation from 16 to 963
> BS29805.pep
MWLRDLRIRLSFFHLMVCLPSIYTNVPSYSDRYNRRPVSQDPGMGTYGRG
YMENRQLSYNRPGPANFQDPRNVELQPKRREYLIRSHETQSDRGQHKCRI
WVPPDTVEKYSYPSVIQTDQANRLSLIEVCCTGYSASRLMGVTVCRAQCG
CQNGSCKIPGECECYDGFVRNDNGDCVFACPLGCQNGQCYLDGSCQCDPG
YKLDETRRFCRPICSSGCGSSPRHNCTEPEICGCSKGYQLTDDGCQPVCE
PDCGIGGLCKDNNQCDCAPGYNLRDGVCQADCYQKCNNGVCVSRNRCLCD
PGYTYHEQSTMCVPV*
BS29805.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:26:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimB5-PC | 315 | CG16873-PC | 1..315 | 1..315 | 1821 | 100 | Plus |
| NimB5-PB | 315 | CG16873-PB | 1..315 | 1..315 | 1821 | 100 | Plus |
| NimB5-PA | 315 | CG16873-PA | 1..315 | 1..315 | 1821 | 100 | Plus |
| NimB1-PA | 402 | CG33119-PA | 53..280 | 92..314 | 516 | 44.2 | Plus |
| NimB1-PB | 403 | CG33119-PB | 53..280 | 92..314 | 516 | 44.2 | Plus |
| NimB1-PA | 402 | CG33119-PA | 198..360 | 130..305 | 284 | 34.3 | Plus |
