BS29809.complete Sequence
806 bp assembled on 2012-05-24
GenBank Submission: KX802566
> BS29809.complete
GAAGTTATCAGTCGACATGTTCGCTCCGATAGATCCTGTAAAGATACCCG
TTGTAAGCAATCCATGGATAACCATGGGCACATTGATTGGCTATCTGCTG
TTTGTGCTCAAGCTGGGCCCCAAAATCATGGAGCACCGAAAGCCCTTCCA
TTTGAATGGCGTCATCAGGATCTACAACATATTCCAGATCCTTTACAATG
GTCTAATACTCGTTTTAGGAGTTCACTTCCTGTTTGTCCTGAAAGCCTAC
CAAATCAGTTGCATTGTTAGCCTGCCGATGGATCACAAATATAAGGATAG
AGAGCGTTTGATTTGCACTTTGTACCTGGTGAACAAATTCGTAGACCTTG
TGGAAACCATTTTCTTTGTGCTCCGCAAAAAGGACAGACAGATATCCTTC
CTGCACGTCTTCCATCATTTTGCGATGGCATTTTTTGGATATCTCTACTA
CTGCTTCCACGGATACGGTGGCGTTGCCTTTCCACAGTGCCTGCTAAACA
CCGCCGTCCACGTGATTATGTACGCCTACTACTATCTATCCTCGATCAGC
AAGGAGGTGCAGAGAAGTCTCTGGTGGAAGAAATACATCACAATTGCTCA
GCTGGTCCAGTTCGCCATTATTCTGCTCCACTGTACCATCACGCTGGCAC
AGCCCAACTGCGCGGTCAACAGACCCTTGACCTACGGATGCGGATCGCTT
TCAGCGTTTTTTGCAGTGATATTTAGCCAATTTTATTACCACAACTACAT
AAAGCCAGGAAAGAAGTCAGCGAAACAAAACAAAAATTAAAAGCTTTCTA
GACCAT
BS29809.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eloF-RA | 774 | CG16905-PA | 1..774 | 17..790 | 3870 | 100 | Plus |
| CG8534-RA | 798 | CG8534-PA | 370..618 | 362..613 | 355 | 77 | Plus |
| CG5278-RA | 888 | CG5278-PA | 377..443 | 351..417 | 185 | 85.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:25:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eloF-RA | 933 | CG16905-RA | 17..795 | 12..790 | 3880 | 99.9 | Plus |
| CG8534-RA | 990 | CG8534-RA | 428..676 | 362..613 | 355 | 77 | Plus |
| CG5278-RA | 1722 | CG5278-RA | 545..611 | 351..417 | 185 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:25:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9814448..9815020 | 218..790 | 2865 | 100 | Plus |
| 3R | 32079331 | 3R | 9814177..9814383 | 12..218 | 1020 | 99.5 | Plus |
| 3R | 32079331 | 3R | 9813377..9813625 | 362..613 | 355 | 77 | Plus |
| 3R | 32079331 | 3R | 22559794..22559860 | 417..351 | 185 | 85.1 | Minus |
Blast to na_te.dros performed 2014-11-28 11:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 3607..3646 | 758..797 | 110 | 75 | Plus |
BS29809.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:35 Download gff for
BS29809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eloF-RA | 27..777 | 22..772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:36 Download gff for
BS29809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eloF-RA | 27..777 | 22..772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:42:50 Download gff for
BS29809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eloF-RA | 27..777 | 22..772 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:42:50 Download gff for
BS29809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9814187..9814382 | 22..217 | 100 | -> | Plus |
| 3R | 9814448..9815002 | 218..772 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:36 Download gff for
BS29809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5639909..5640104 | 22..217 | 100 | -> | Plus |
| arm_3R | 5640170..5640724 | 218..772 | 100 | | Plus |
BS29809.pep Sequence
Translation from 16 to 789
> BS29809.pep
MFAPIDPVKIPVVSNPWITMGTLIGYLLFVLKLGPKIMEHRKPFHLNGVI
RIYNIFQILYNGLILVLGVHFLFVLKAYQISCIVSLPMDHKYKDRERLIC
TLYLVNKFVDLVETIFFVLRKKDRQISFLHVFHHFAMAFFGYLYYCFHGY
GGVAFPQCLLNTAVHVIMYAYYYLSSISKEVQRSLWWKKYITIAQLVQFA
IILLHCTITLAQPNCAVNRPLTYGCGSLSAFFAVIFSQFYYHNYIKPGKK
SAKQNKN*
BS29809.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eloF-PA | 257 | CG16905-PA | 1..257 | 1..257 | 1373 | 100 | Plus |
| CG8534-PA | 265 | CG8534-PA | 14..264 | 6..257 | 793 | 59.1 | Plus |
| CG9458-PA | 264 | CG9458-PA | 12..262 | 3..253 | 679 | 49.4 | Plus |
| CG16904-PA | 262 | CG16904-PA | 11..262 | 6..257 | 670 | 48.4 | Plus |
| CG9459-PA | 265 | CG9459-PA | 12..262 | 3..252 | 617 | 48 | Plus |
