BS29812.complete Sequence
854 bp assembled on 2012-05-24
GenBank Submission: KX805663
> BS29812.complete
GAAGTTATCAGTCGACATGTTGCTCATTTTGTTACCACTTGTTCTGTTCA
CTTCGAGTGCCGCAAGTCAGATCCTATATCCGCCGCAGTATACCAAGAAT
CGCATTGTGGGCGGGGAGGAGGCTGCCGCAGGTCTGGCACCTTATCAGAT
ATCCCTTCAAGGAATCGGCAGTGGAGCTCATTCCTGTGGCGGTGCTATCA
TCGATGAACGGTGGATTATAACGGCGGCTCACTGTACAAGAGGCAGACAG
GCGACGGCATTTCGGGTCCTAACAGGCACACAGGATCTGCATCAAAATGG
ATCCAAGTATTACTATCCCGACAGGATTGTGGAGCATAGTAACTATGCAC
CACGCAAGTATCGCAACGATATAGCTTTACTGCATCTGAATGAATCGATT
GTGTTTGATAATGCCACTCAACCGGTGGAACTGGATCACGAGGCCTTGGT
TCCAGGATCCCGACTCCTTTTAACCGGTTGGGGAACCCTCTCCTTGGGCG
GAGATGTTCCCGCCCGTCTGCAGAGTCTGGAGGTCAACTATGTGCCCTTC
GAGCAGTGTCGAGCTGCCCACGACAATAGCACTCGGGTGGACATTGGCCA
CGTTTGCACCTTCAATGACAAGGGACGCGGAGCGTGTCATGGAGATTCCG
GTGGTCCTCTGGTGCACAATGGCAAGCTGGTGGCTCTGGTCAACTGGGGA
CTGCCATGTGCTAAAGGATATCCAGATGCTCACGCTTCAATTTCATATTA
TCACGACTTTATACGCACTCACCTAAGTCTATCCAAAACGGACAGCTCTG
AGGATATCGAGGAGGAAATGATTGCTCTCCAGGATTAGAAGCTTTCTAGA
CCAT
BS29812.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5255-RA | 822 | CG5255-PA | 1..822 | 17..838 | 4110 | 100 | Plus |
| CG31269-RB | 822 | CG31269-PB | 640..702 | 638..700 | 180 | 85.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5255-RA | 914 | CG5255-RA | 12..840 | 10..838 | 4115 | 99.8 | Plus |
| CG31269-RB | 937 | CG31269-RB | 645..707 | 638..700 | 180 | 85.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:25:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17137904..17138619 | 10..725 | 3550 | 99.7 | Plus |
| 3R | 32079331 | 3R | 17138676..17138791 | 723..838 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:25:19 has no hits.
BS29812.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:33 Download gff for
BS29812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5255-RA | 8..824 | 22..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:32 Download gff for
BS29812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5255-RA | 24..840 | 22..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:42:46 Download gff for
BS29812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5255-RA | 24..840 | 22..838 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:42:46 Download gff for
BS29812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17137916..17138619 | 22..725 | 100 | -> | Plus |
| 3R | 17138679..17138791 | 726..838 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:32 Download gff for
BS29812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12963638..12964341 | 22..725 | 100 | -> | Plus |
| arm_3R | 12964401..12964513 | 726..838 | 100 | | Plus |
BS29812.pep Sequence
Translation from 16 to 837
> BS29812.pep
MLLILLPLVLFTSSAASQILYPPQYTKNRIVGGEEAAAGLAPYQISLQGI
GSGAHSCGGAIIDERWIITAAHCTRGRQATAFRVLTGTQDLHQNGSKYYY
PDRIVEHSNYAPRKYRNDIALLHLNESIVFDNATQPVELDHEALVPGSRL
LLTGWGTLSLGGDVPARLQSLEVNYVPFEQCRAAHDNSTRVDIGHVCTFN
DKGRGACHGDSGGPLVHNGKLVALVNWGLPCAKGYPDAHASISYYHDFIR
THLSLSKTDSSEDIEEEMIALQD*
BS29812.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5255-PA | 273 | CG5255-PA | 1..273 | 1..273 | 1447 | 100 | Plus |
| CG31269-PB | 273 | CG31269-PB | 5..260 | 1..254 | 607 | 50 | Plus |
| CG17475-PB | 288 | CG17475-PB | 47..272 | 27..254 | 562 | 47.4 | Plus |
| CG17475-PA | 288 | CG17475-PA | 47..272 | 27..254 | 562 | 47.4 | Plus |
| CG31265-PA | 266 | CG31265-PA | 8..259 | 2..254 | 547 | 44.9 | Plus |
