Clone BS29814 Report

Search the DGRC for BS29814

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:298
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptRrp42-RA
Protein status:BS29814.pep: full length peptide match
Sequenced Size:923

Clone Sequence Records

BS29814.complete Sequence

923 bp assembled on 2012-07-26

GenBank Submission: KX803117

> BS29814.complete
GAAGTTATCAGTCGACATGGCATACGTTGCACTGAGCGAAGCTGAAAAAA
CATATATTCTACACGGCGTGGAGGATGACTTTCGTTGCGATGGACGTTCA
CGACGAGATTACCGGCCCATGGACCTGGAAACTGGACTGGTTAGCAATGC
CAGTGGATCCGCTCGCCTTCGGCTGGCGAACACAGACATACTGGTGGGCG
TCAAAACCGAGATTGATGTACCCAACCCGCTGACGCCCGAGTTTGGTAAA
CTGGAATTTTTTGTGGATTGCTCTGCTAATGCCACGCCGGAGTTTGAAGG
ACGCGGGGGCTCGGATCTGGCCCAAGAACTTATTCTCTCCCTGCAGAACG
CCTACGAATCGCCATTGGCCTTCAACTACCGCACGTTGTGCCTCATTCCG
GGTCAGCAGTGCTGGAAGCTGTACATAGACATCCTGATTCTGGAGTGTGG
CGGCAATCTACACGACGCAGTGTCGCTGGCCGCCAAAGCGGCTCTGTTCA
ACACAAAGCTGCCCCGGGTGACAGCCACCATGTTGGATGCCGGCATCACA
GACCTCATCATATCGGACAATCCGTATGACTGCACCCGCATCGGCATCGA
GACGGTTCCGCTGTTGGTCACAGTTTGCAAGATCGGTGATTATGTCCTGG
TGGATCCTTCGGCGGAGGAGGAAGTCTGCAGCACAGTGAGCATGGTTGTG
TCAGTTTCCATGCGGAATGGACAGGCATTCCTTTCGGGTACACACTTGAC
CGGCGGCGGAGCCATGCACCGGGACACCATGCGCAACTGTCTGGAGCTGG
GTCTGGCCATTGGCGAGCATCTGGACCGGCTGCTCACTAAAATGCTAAAT
CTGGAGCAGCAGCGCGTCGGACTCAAGCGACCGCAAATAGTAGGATTTCT
TAAATAAAAGCTTTCTAGACCAT

BS29814.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
Rrp42-RA 891 CG8395-PA 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
Rrp42-RA 981 CG8395-RA 71..962 17..908 4460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16015559..16016031 436..908 2365 100 Plus
2R 25286936 2R 16015090..16015288 72..270 995 100 Plus
2R 25286936 2R 16015339..16015505 270..436 835 100 Plus
2R 25286936 2R 16014978..16015035 17..74 290 100 Plus
Blast to na_te.dros performed on 2014-11-28 11:45:51 has no hits.

BS29814.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 14:34:12 Download gff for BS29814.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp42-RA 1..889 17..905 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:50 Download gff for BS29814.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp42-RA 71..959 17..905 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:50:47 Download gff for BS29814.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp42-RA 71..959 17..905 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:50:47 Download gff for BS29814.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16015340..16015505 271..436 100 -> Plus
2R 16014978..16015034 17..73 100 -> Plus
2R 16015092..16015288 74..270 100 -> Plus
2R 16015560..16016028 437..905 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:50 Download gff for BS29814.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11902483..11902539 17..73 100 -> Plus
arm_2R 11902597..11902793 74..270 100 -> Plus
arm_2R 11902845..11903010 271..436 100 -> Plus
arm_2R 11903065..11903533 437..905 100   Plus

BS29814.pep Sequence

Translation from 16 to 906

> BS29814.pep
MAYVALSEAEKTYILHGVEDDFRCDGRSRRDYRPMDLETGLVSNASGSAR
LRLANTDILVGVKTEIDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSD
LAQELILSLQNAYESPLAFNYRTLCLIPGQQCWKLYIDILILECGGNLHD
AVSLAAKAALFNTKLPRVTATMLDAGITDLIISDNPYDCTRIGIETVPLL
VTVCKIGDYVLVDPSAEEEVCSTVSMVVSVSMRNGQAFLSGTHLTGGGAM
HRDTMRNCLELGLAIGEHLDRLLTKMLNLEQQRVGLKRPQIVGFLK*

BS29814.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
Rrp42-PA 296 CG8395-PA 1..296 1..296 1525 100 Plus