Clone BS29837 Report

Search the DGRC for BS29837

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:298
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptPpat-Dpck-RA
Protein status:BS29837.pep: full length peptide match
Sequenced Size:1589

Clone Sequence Records

BS29837.complete Sequence

1589 bp assembled on 2012-05-24

GenBank Submission: KX801577

> BS29837.complete
GAAGTTATCAGTCGACATGGCTTCATCCACAGGTCTCCTGGTGGTGTCCA
ACATCAAGCACCTTGGCAAATCCCTGCGAGCCATCGAGAAGTACGTGAAT
TCACTGTACATCCACCTAAATGTGGCGGGGTCAACGTCCACGACGTCACC
AGTTCCACCGCCTCCGGTTTGGGGTCGTCTAATCTCGCAGCTGTACGCCA
ACAGCAGCAGCTATGTGGGCAAGCAGTTGGACCTTCGCGTCCTTGTCTCT
CCCCTACGACCAGGTGCCAATGGATCCCTGAAGTTGCGCCAGCCCGTCGA
CCTAATCTTCTCGGATGCACATCATCCGGAGCTGTGCGACAGGCTTCGCG
CGGATCTTAACATCAGCAAGCCAACAATCTTCCTGGATGACTCGGTCATC
TCGGATTTAAGTGCCCAGCAGGATGACACCCAGCCGCCTAAGGTGTATCC
CTCGGTTGTCCTGGGCGGAACATTCGATCGCATCCATCTGGGACACAAGA
TATTCCTCACCCAGGCTGTACTGCGCACCTGCAAGCGTTTGGTTGTGGGC
GTAACCACCTCCGCCATGACGAAGGGAAAGACGCTGCCGGACTTGATTTT
GCCCGTGGAAGAGCGCATCGCCCGGCTAAGGGAGTTCCTGGTGGACATAG
ATGATACGCTGCAGTACGAAATTGTGCCCATCGATGATCCCTTTGGTCCC
ACGCAAGTGGATCCTGACCTGGACATGATTGTGGTCAGTGCGGAGACGTT
GCGAGGAGGGCAGAAGGTCAACGAGGTACGCTCCGCTAAGCAACTGCGCG
AGCTGGAGATCTTTGTGATTGACATTGTTGAAAGCAACGTGCATGATGGC
ATCCACGAGACCAAGGTCAGCTCGAGTAACACACGCATCGATCTGCTGGG
AACCCGCTGGAGAAGGCCGGAGCCACGACCACAGCTCCCGCCGCGCCCTT
ACATTATTGGACTCACTGGCGGCATCGCATCTGGCAAGAGCAAGATGGGC
GAGAGATTGGCCAACATGGGCGCCCACGTGATCGACTGCGATAAGGTGGC
GCACGATGTTTACGAACCTGGTCAGTTGTGCTACACCCGAATTGTGCAGC
ACTTCGGACAGGGTATTGTTTCAGACGATGGTCGCATCGATCGGTCCAAG
CTGGGACCCTTGGTGTTTGCCGATCCCAAGCAGTTGCAAGCACTCAACGG
CATTGTCTGGCCGGAACTTATTGCGGAGGTTAACAGGCGGCTGGATGCAC
TGCGTTCCCAGGCGGACGTGCCGCGTGTGGTGGTCCTGGAGGCAGCGGTG
CTGCTGCGAGCGGGCTGGGAGACCAATTGCCATGAGGTGTGGTCCATGAT
TGTGCCACCGGATGAGGCTGTGCGGCGGATTATTGAGCGCAACAAGTTGA
GCGAAGTGGAGGCCCAAAAGCGACTGGCCAGTCAGGTGCCCAATTCTGAG
ATCGTGGCCAAGTCGCATGTGATATTCAGTTCGCAATGGGATCACGAATT
CACCCAGAAACAGGCGGAGCGTGCGTGGAAAATGCTTACCAAGGAACTGG
ACTCTTACCAGAGCAGCCTTTAAAAGCTTTCTAGACCAT

BS29837.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ppat-Dpck-RA 1557 CG10575-PA 1..1557 17..1573 7785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
Ppat-Dpck-RA 1711 CG10575-RA 36..1592 17..1573 7785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5767136..5768134 1573..575 4995 100 Minus
3L 28110227 3L 5768193..5768759 583..17 2820 99.8 Minus
Blast to na_te.dros performed on 2014-11-28 11:25:43 has no hits.

BS29837.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:37 Download gff for BS29837.complete
Subject Subject Range Query Range Percent Splice Strand
Ppat-Dpck-RA 36..1590 17..1571 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:44 Download gff for BS29837.complete
Subject Subject Range Query Range Percent Splice Strand
Ppat-Dpck-RA 36..1590 17..1571 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:42:59 Download gff for BS29837.complete
Subject Subject Range Query Range Percent Splice Strand
Ppat-Dpck-RA 36..1590 17..1571 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:42:59 Download gff for BS29837.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5767138..5768133 576..1571 100 <- Minus
3L 5768201..5768759 17..575 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:44 Download gff for BS29837.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5760238..5761233 576..1571 100 <- Minus
arm_3L 5761301..5761859 17..575 100   Minus

BS29837.pep Sequence

Translation from 16 to 1572

> BS29837.pep
MASSTGLLVVSNIKHLGKSLRAIEKYVNSLYIHLNVAGSTSTTSPVPPPP
VWGRLISQLYANSSSYVGKQLDLRVLVSPLRPGANGSLKLRQPVDLIFSD
AHHPELCDRLRADLNISKPTIFLDDSVISDLSAQQDDTQPPKVYPSVVLG
GTFDRIHLGHKIFLTQAVLRTCKRLVVGVTTSAMTKGKTLPDLILPVEER
IARLREFLVDIDDTLQYEIVPIDDPFGPTQVDPDLDMIVVSAETLRGGQK
VNEVRSAKQLRELEIFVIDIVESNVHDGIHETKVSSSNTRIDLLGTRWRR
PEPRPQLPPRPYIIGLTGGIASGKSKMGERLANMGAHVIDCDKVAHDVYE
PGQLCYTRIVQHFGQGIVSDDGRIDRSKLGPLVFADPKQLQALNGIVWPE
LIAEVNRRLDALRSQADVPRVVVLEAAVLLRAGWETNCHEVWSMIVPPDE
AVRRIIERNKLSEVEAQKRLASQVPNSEIVAKSHVIFSSQWDHEFTQKQA
ERAWKMLTKELDSYQSSL*

BS29837.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
Ppat-Dpck-PA 518 CG10575-PA 1..518 1..518 2657 100 Plus
Dpck-PA 236 CG1939-PA 2..196 312..507 243 29.9 Plus