BS29840.complete Sequence
1439 bp assembled on 2012-05-24
GenBank Submission: KX803933
> BS29840.complete
GAAGTTATCAGTCGACATGTCTTCTTCGATTGCAGTGGTGCTGGTGGTGG
TGCTGATTGGGATTTCTGAGTCCATTAAGACTGATTCTCTGATGATGACC
TCTTCTTTAACTCCAGAGATTTCGAAGTCTGATAAATTAAAACTAATCGT
GTCGCAAAATGCGGAAAGTTCAAAGGATACAGATGCCATCGAAACTGACA
TCTCAAACGAACATGATCCACGTGATGCCTTAAAGGATTCTAGTTCGCCG
GATGCGGATGTTTTAAGGAATAAGACAACTGAAGGCTTAATTTCTTTGAA
TAATAAAGCCGAGAACACAATGACAGGATTGGATGATTCTGAAAGTCTTA
AGTTGGCACGGCCAGCGAGTTCATATCAGGAAGCGCTGCTCAATCGCCTA
CAGGATCAGTTGAATCAGTTCGTTGTTGGCTTGCCCCTGGACTTGGGCTT
CTCCACCTTGAACTATATATGCAGCACCATTGTGGACCTCGGAGTGGTGA
GGTCCAAGCTAATACCGGATATGTCGCGTATGAGTTTTCTGCTTCGATCG
AGTGATGATTGTCAGAATACCAGTATTCCACTGACGCAGGCGGAGCAGTT
ATGGAACACTACCGGATTTTATCAGGATCGACCCACTGTCTTGTTCATCA
CCGGCTGGACAACGAGCATTAACAATTCCAATAGTGGTCCCGTGGCAAAA
GCTTATCTTTGTCGCAATGATACCAATGTTTTGATTCTAGATGCTGCGAA
CTTCATAGACACCCTGTATACATGGTCTGCCCTGAACACAGAGGTTATTG
GAGATTATCTGGCCAAGGCGCTCCTCCGGCTGAATACGAGCTATGTGACC
AAACAGTTCCATTTGGTGGGTCACAGCTTGGGCGCCCAAATAGCCGGTTC
AGCGGGCAGAAACTATCGACGATTGTCTGGGGGACAAATCCTGAAGAGAA
TCACCGGATTGGATCCGGCTAACCCATGTTTTTACGATGGCAATGAGCTG
GAGGGTCTGCGGAGTGGCGATGCCCGATTTGTAGACATTATCCACACCAA
TCCCGGCATGTTTGGCACATCGAAGCGGGCCGGCGATGCTGACTTCTTTG
TCCAGGGACGGATTCCCTTCAAGCCGGGATGCGAGAGCCTTGACCCCATT
AGCTGTTCGCATCAGAGAGCCGTGGATTACTGGACGGAAACGGTGTATCC
GTCGAATGGGAATGACTTCCTGGCCAAGCGATGTAAGCGCTATTCGGAAC
TCCTTCTCGGAAACTATTGCAAGAACACGAATACCGTGATGGGCTATGCC
GCCAAGGCCACGGATCTGGGCCTGTTCTACGTGGGCGCCAATCCAGAGGA
GCCCTATGGCCAAAATGCCAATCTGCAGAGCTACACAAACTCCGACACAA
AATGTGGATCTTGTGCATCATGAAAGCTTTCTAGACCAT
BS29840.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:25:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18258-RA | 1407 | CG18258-PA | 1..1407 | 17..1423 | 7035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18258-RA | 1497 | CG18258-RA | 21..1429 | 16..1424 | 7045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:25:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17212327..17213044 | 16..733 | 3590 | 100 | Plus |
| X | 23542271 | X | 17213214..17213909 | 729..1424 | 3465 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:25:46 has no hits.
BS29840.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:38 Download gff for
BS29840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18258-RA | 1..1406 | 17..1422 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:45 Download gff for
BS29840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18258-RA | 22..1427 | 17..1422 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:43:00 Download gff for
BS29840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18258-RA | 22..1427 | 17..1422 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:43:00 Download gff for
BS29840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17212328..17213044 | 17..733 | 100 | -> | Plus |
| X | 17213219..17213907 | 734..1422 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:45 Download gff for
BS29840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17106361..17107077 | 17..733 | 100 | -> | Plus |
| arm_X | 17107252..17107940 | 734..1422 | 100 | | Plus |
BS29840.pep Sequence
Translation from 16 to 1422
> BS29840.pep
MSSSIAVVLVVVLIGISESIKTDSLMMTSSLTPEISKSDKLKLIVSQNAE
SSKDTDAIETDISNEHDPRDALKDSSSPDADVLRNKTTEGLISLNNKAEN
TMTGLDDSESLKLARPASSYQEALLNRLQDQLNQFVVGLPLDLGFSTLNY
ICSTIVDLGVVRSKLIPDMSRMSFLLRSSDDCQNTSIPLTQAEQLWNTTG
FYQDRPTVLFITGWTTSINNSNSGPVAKAYLCRNDTNVLILDAANFIDTL
YTWSALNTEVIGDYLAKALLRLNTSYVTKQFHLVGHSLGAQIAGSAGRNY
RRLSGGQILKRITGLDPANPCFYDGNELEGLRSGDARFVDIIHTNPGMFG
TSKRAGDADFFVQGRIPFKPGCESLDPISCSHQRAVDYWTETVYPSNGND
FLAKRCKRYSELLLGNYCKNTNTVMGYAAKATDLGLFYVGANPEEPYGQN
ANLQSYTNSDTKCGSCAS*
BS29840.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18258-PA | 468 | CG18258-PA | 1..468 | 1..468 | 2420 | 100 | Plus |
| CG5162-PB | 411 | CG5162-PB | 62..387 | 134..466 | 678 | 41 | Plus |
| CG5162-PA | 411 | CG5162-PA | 62..387 | 134..466 | 678 | 41 | Plus |
| CG5665-PB | 376 | CG5665-PB | 54..360 | 140..451 | 654 | 40.3 | Plus |
| CG5665-PC | 395 | CG5665-PC | 54..379 | 140..451 | 625 | 38.3 | Plus |
