BS29849.complete Sequence
1301 bp assembled on 2012-05-24
GenBank Submission: KX802571
> BS29849.complete
GAAGTTATCAGTCGACATGATATTCGCTCGGTGGACGCGCAAACAAATGC
TCACAATGTTTGGCTTGGGAGCTGGGCTGCTGGGCCTTGTGATTGTGATC
GGTGTGCTCAACAGCGGCGTGTCCTCGAAGGACCTCGACTGGAAGGAGGC
GTCCAGATCGAAGTGCTTCAAGACGCGTCCCAACACCACGCACTCCACCT
TGGAACTGGTGCACATTGTGTTCAGACATGGCATTCGCACCCCAGTGGAC
ACTTATCCCAAGGATCCCTACTTAAACGACGGCTTCAAGCCAACGGGCTG
GGGACATGTGACTAACTCAGGAAAACGGGAACTCTTCGAAATGGGTCGCT
GGCTGAATCGAAGATACGGCGAGTTTATGGGTCCTTATTACAGACCGGAT
CGCCTGCATGCCCAAGCCACTGCCTCTCCGAGGGCCATGATGTCTTTGCA
AACAACACTGGCCAGCATGTTTGAGCCGCGGGGAACCCCCATGGAGTGGA
ATAAGCACCTCAACTGGCAGCCCATCCCAATCGTGTCGGAACCCCTGGAT
GAGGACTCGCTCCTGCTGGTGCGCACTCCCTGTCCCCGCTACTTTGAAGC
CTTGGAAGAGGTCTTTAAGAGACCGGAAGTTATCGCTGAAACCGAGCCCT
ACGAACAAATGTTCCGCGAGCTGACAAATCTGACTGGAAAGGCGATCCAG
AGTGCCGAGGATATCAATTCCCTATACATAACCCTCCTCGCCGAACAGGA
ATTCGGCTACAAGTTGCCCGACTGGGCCAAGGACTACTTCCCCGATCGCA
TGCAGTTTCTGGCCGAGCAGAGTTACGTCTACAATGCGTACACCCCCGAG
ATGCAGAAGATCAAGGGCGGACCGTTTCTGAAGAGGATGTACAAGGAGAT
GGTCGCCAAGAGGGCGGGTAGCCTGAAGCCCAAGGATCGCGGTATGTTCA
TATACACCGGCCACGACTGGACCGTCGGCAATATCCTGATGGCCTTGGGT
GTGTGGAAGCGCCAGATGCCACGGTTCGCGGTGATGGCCATTTTCGAGAC
GCATAGGGATAAGGAAACCGGAGAGTACTATGTGGAGATCTTCCTCCGCA
ACGACGAGGACGGCTGTCTCGAGCAGCTCCAGCTGAAAGACTGCGACCGC
CGGTGTCCACTGGACCGCCTCATCAAGCTGAGTGCCGATGTGCTGCCCAC
GGAGCCGGCGGAGCAGAGATGCCGGCCACATGACTCGAACTTCGTGGAGC
CACCGCCGCGCGTAATCGATCAGAATGGCCGTTAGAAGCTTTCTAGACCA
T
BS29849.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9452-RA | 1269 | CG9452-PA | 1..1269 | 17..1285 | 6345 | 100 | Plus |
| CG9449-RH | 1215 | CG9449-PH | 748..829 | 803..884 | 260 | 87.8 | Plus |
| CG9449-RG | 1215 | CG9449-PG | 748..829 | 803..884 | 260 | 87.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:25:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9452-RA | 1652 | CG9452-RA | 249..1517 | 17..1285 | 6345 | 100 | Plus |
| CG9449-RH | 2589 | CG9449-RH | 1759..1840 | 803..884 | 260 | 87.8 | Plus |
| CG9449-RG | 1939 | CG9449-RG | 1326..1407 | 803..884 | 260 | 87.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:25:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19501746..19502274 | 1087..559 | 2645 | 100 | Minus |
| 3L | 28110227 | 3L | 19503323..19503622 | 316..17 | 1500 | 100 | Minus |
| 3L | 28110227 | 3L | 19501145..19501344 | 1285..1086 | 1000 | 100 | Minus |
| 3L | 28110227 | 3L | 19502326..19502484 | 559..401 | 795 | 100 | Minus |
| 3L | 28110227 | 3L | 19502542..19502625 | 400..317 | 420 | 100 | Minus |
| 3L | 28110227 | 3L | 19492802..19492883 | 884..803 | 260 | 87.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:25:50 has no hits.
BS29849.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:39 Download gff for
BS29849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9452-RA | 249..1517 | 17..1285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:48 Download gff for
BS29849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9452-RA | 249..1517 | 17..1285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:43:02 Download gff for
BS29849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9452-RA | 249..1517 | 17..1285 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:43:02 Download gff for
BS29849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19502542..19502625 | 317..400 | 100 | <- | Minus |
| 3L | 19502326..19502484 | 401..559 | 100 | <- | Minus |
| 3L | 19503323..19503622 | 17..316 | 100 | | Minus |
| 3L | 19501145..19501342 | 1088..1285 | 100 | <- | Minus |
| 3L | 19501746..19502273 | 560..1087 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:48 Download gff for
BS29849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19495426..19495584 | 401..559 | 100 | <- | Minus |
| arm_3L | 19495642..19495725 | 317..400 | 100 | <- | Minus |
| arm_3L | 19496423..19496722 | 17..316 | 100 | | Minus |
| arm_3L | 19494245..19494442 | 1088..1285 | 100 | <- | Minus |
| arm_3L | 19494846..19495373 | 560..1087 | 100 | <- | Minus |
BS29849.pep Sequence
Translation from 16 to 1284
> BS29849.pep
MIFARWTRKQMLTMFGLGAGLLGLVIVIGVLNSGVSSKDLDWKEASRSKC
FKTRPNTTHSTLELVHIVFRHGIRTPVDTYPKDPYLNDGFKPTGWGHVTN
SGKRELFEMGRWLNRRYGEFMGPYYRPDRLHAQATASPRAMMSLQTTLAS
MFEPRGTPMEWNKHLNWQPIPIVSEPLDEDSLLLVRTPCPRYFEALEEVF
KRPEVIAETEPYEQMFRELTNLTGKAIQSAEDINSLYITLLAEQEFGYKL
PDWAKDYFPDRMQFLAEQSYVYNAYTPEMQKIKGGPFLKRMYKEMVAKRA
GSLKPKDRGMFIYTGHDWTVGNILMALGVWKRQMPRFAVMAIFETHRDKE
TGEYYVEIFLRNDEDGCLEQLQLKDCDRRCPLDRLIKLSADVLPTEPAEQ
RCRPHDSNFVEPPPRVIDQNGR*
BS29849.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9452-PA | 422 | CG9452-PA | 1..422 | 1..422 | 2273 | 100 | Plus |
| CG9449-PH | 404 | CG9449-PH | 4..402 | 4..415 | 1227 | 54.5 | Plus |
| CG9449-PG | 404 | CG9449-PG | 4..402 | 4..415 | 1227 | 54.5 | Plus |
| CG9449-PF | 404 | CG9449-PF | 4..402 | 4..415 | 1227 | 54.5 | Plus |
| CG9449-PK | 391 | CG9449-PK | 29..389 | 55..415 | 1222 | 58.7 | Plus |
