BS29862.complete Sequence
1559 bp assembled on 2012-05-24
GenBank Submission: KX803387
> BS29862.complete
GAAGTTATCAGTCGACATGCTGAAGTACATGATTTGCGCCATCGTTGTGG
GCGCCAAAAAGAGCACATCCTCTAAGTATAATGGATCCTACGACTACGAC
CTTATTGTGATTGGAGGCGGCTCAGCTGGCCTGGCCTGCGCCAAGGAGGC
AGTCCTCAATGGAGCCCGTGTGGCCTGTCTGGATTTCGTTAAGCCCACGC
CCACTCTGGGCACCAAGTGGGGCGTTGGCGGCACCTGCGTGAACGTGGGC
TGCATTCCCAAGAAGCTGATGCACCAGGCCTCCCTTCTGGGCGAGGCTGT
CCATGAGGCGGCCGCCTACGGCTGGAACGTGGACGAAAAGATCAAGCCAG
ACTGGCACAAGCTGGTGCAGTCCGTACAGAACCACATCAAGTCCGTCAAC
TGGGTGACCCGTGTGGATCTGCGCGACAAGAAAGTGGAGTACATCAATGG
ACTGGGCTCCTTCGTGGACTCGCACACACTGCTGGCCAAGCTGAAGAGCG
GCGAGCGCACAATCACCGCCCAGACCTTCGTCATTGCCGTTGGCGGCCGA
CCACGTTATCCGGATATTCCCGGTGCTGTCGAGTATGGCATCACCAGCGA
TGATCTGTTCAGTTTGGACCGCGAGCCCGGCAAGACCCTGGTGGTGGGAG
CTGGCTACATTGGCTTGGAGTGCGCTGGATTCCTGAAGGGTCTCGGCTAC
GAGCCCACTGTGATGGTGCGTTCTATTGTGCTGCGTGGCTTCGACCAGCA
GATGGCCGAGCTGGTGGCAGCCTCGATGGAGGAGCGTGGCATTCCTTTCC
TCCGCAAGACGGTGCCGCTGTCCGTGGAAAAGCAGGATGATGGCAAGCTG
CTCGTGAAGTACAAGAACGTGGAGACCGGCGAGGAGGCCGAGGATGTTTA
CGACACCGTTCTGTGGGCCATCGGCCGCAAGGGTCTGGTGGACGATCTGA
ACCTGCCCAATGCCGGCGTGACTGTGCAGAAGGACAAGATTCCAGTGGAC
TCCCAGGAGGCTACCAATGTGGCAAACATCTACGCTGTCGGCGATATCAT
CTATGGCAAGCCAGAGCTGACGCCCGTCGCCGTTTTGGCTGGCCGTTTGC
TGGCCCGCCGCCTGTACGGAGGATCTACCCAGCGCATGGACTACAAGGAT
GTGGCCACCACCGTTTTCACGCCCCTGGAGTACGCCTGCGTCGGCCTGAG
CGAGGAGGATGCCGTCAAGCAGTTCGGAGCCGATGAGATCGAGGTGTTCC
ACGGCTACTACAAGCCCACGGAGTTCTTCATTCCCCAGAAGAGCGTGCGC
TACTGCTACTTGAAGGCTGTGGCCGAGCGCCATGGTGACCAGCGCGTCTA
TGGACTGCACTATATTGGCCCGGTGGCCGGTGAGGTTATCCAGGGATTCG
CTGCCGCTTTGAAGTCTGGCCTGACTATTAACACGCTGATCAACACCGTG
GGCATCCATCCCACTACCGCCGAAGAATTCACCCGGCTGGCCATCACCAA
GCGCTCCGGACTGGACCCCACGCCGGCCAGCTGCTGCAGCTAAAAGCTTT
CTAGACCAT
BS29862.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:25:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trxr-1-RC | 1527 | CG2151-PC | 1..1527 | 17..1543 | 7620 | 99.9 | Plus |
| Trxr-1-RB | 1791 | CG2151-PB | 331..1791 | 83..1543 | 7290 | 99.9 | Plus |
| Trxr-1-RA | 1476 | CG2151-PA | 16..1476 | 83..1543 | 7290 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:25:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trxr-1-RC | 2108 | CG2151-RC | 242..1770 | 16..1544 | 7630 | 99.9 | Plus |
| Trxr-1-RB | 2277 | CG2151-RB | 478..1939 | 83..1544 | 7295 | 99.9 | Plus |
| Trxr-1-RA | 2003 | CG2151-RA | 204..1665 | 83..1544 | 7295 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:25:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8246808..8247695 | 657..1544 | 4425 | 99.9 | Plus |
| X | 23542271 | X | 8246093..8246446 | 83..436 | 1755 | 99.7 | Plus |
| X | 23542271 | X | 8246510..8246736 | 430..656 | 1135 | 100 | Plus |
| 3L | 28110227 | 3L | 22550864..22551867 | 536..1539 | 940 | 72.9 | Plus |
| 3L | 28110227 | 3L | 22550410..22550764 | 88..442 | 715 | 81.3 | Plus |
| X | 23542271 | X | 8244430..8244498 | 16..84 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:25:54 has no hits.
BS29862.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:40 Download gff for
BS29862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trxr-1-RC | 45..1569 | 17..1541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:50 Download gff for
BS29862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trxr-1-RC | 46..1570 | 17..1541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:43:04 Download gff for
BS29862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trxr-1-RC | 243..1767 | 17..1541 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:43:04 Download gff for
BS29862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8244431..8244497 | 17..83 | 100 | -> | Plus |
| X | 8246094..8246439 | 84..429 | 100 | -> | Plus |
| X | 8246510..8246736 | 430..656 | 100 | -> | Plus |
| X | 8246808..8247692 | 657..1541 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:50 Download gff for
BS29862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8138464..8138530 | 17..83 | 100 | -> | Plus |
| arm_X | 8140127..8140472 | 84..429 | 100 | -> | Plus |
| arm_X | 8140543..8140769 | 430..656 | 100 | -> | Plus |
| arm_X | 8140841..8141725 | 657..1541 | 99 | | Plus |
BS29862.pep Sequence
Translation from 16 to 1542
> BS29862.pep
MLKYMICAIVVGAKKSTSSKYNGSYDYDLIVIGGGSAGLACAKEAVLNGA
RVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAA
YGWNVDEKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFV
DSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSL
DREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELV
AASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEEAEDVYDTVLW
AIGRKGLVDDLNLPNAGVTVQKDKIPVDSQEATNVANIYAVGDIIYGKPE
LTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAV
KQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYI
GPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTRLAITKRSGLD
PTPASCCS*
BS29862.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trxr-1-PC | 508 | CG2151-PC | 1..508 | 1..508 | 2641 | 100 | Plus |
| Trxr-1-PB | 596 | CG2151-PB | 107..596 | 19..508 | 2532 | 99.4 | Plus |
| Trxr-1-PA | 491 | CG2151-PA | 6..491 | 23..508 | 2531 | 100 | Plus |
| Trxr-2-PA | 516 | CG11401-PA | 31..516 | 25..508 | 1979 | 76.8 | Plus |
| CG7430-PB | 504 | CG7430-PB | 21..487 | 8..486 | 398 | 28 | Plus |
