BS29886.complete Sequence
1193 bp assembled on 2012-06-04
GenBank Submission: KX806055
> BS29886.complete
GAAGTTATCAGTCGACATGCCAGCAACGATGTTTGATTCCCAGCTGAGTT
TGTGCGCGGGTCGCATTGTCGCCGATTCCACCACCACCACTACCTCCGGC
ATGGATGGATGCGATGGTGCCAAGACGATGATATGCCGCGCTTGTCTTGT
GCTACTGGGTCCGCAGGATGCGTGTCACAATCTGGACAGCGAACAGGATC
TGGCCAGCAAGTACTACGGCTGTACTGGAGAGGATGCCGTTAGGGATTTG
CCACCCCAGTTGGTGCTGAAAAGCATCTGCGAGTGCTGCTATCAGTTGGT
GCAAAAGTTCCACGACTTTCAACGCATGTGCGCAGAGTCCTTGCGCAATT
TTGAGAAGCTGCTGCAGGACATCGACATCGGATGCCACAAACTGGAGGAC
CACACTTGGCACGACTTGGACACCCCCTCGGAGAGCAACGAGTCCACTAA
TCCGGAAGCCCAGTCGCACGCACCCTGCATCGCAGCGACGCAGGAGATTG
AGGAAGTCTACGTAATAGAGGACGAGTCAGCCAAACAGGATCTGGGCCAG
GAGAAGCTATCCATTTCTAGCAAGTTGCTGGGTGCCAGAAAACGACGAGG
AGTGCGACACACCCTCGAGTGCCGAATTTGCCACCGTGGCTTCTACAAAC
CGTCGCTGCTGGAGGCCCATATGCAGCAGCATGAGGGTCTGAGACCGTAT
ACCTGCGTCCATTGTGCCAAGAGCTATGCCCGGGCCAATCTGCTGGAGTC
GCACCTGCGGCAGATGCATAACAATGCCGACGCTGCGCGGATCATCTATG
CCTGTCCGAGCTGCAACAAGGTGTACACAGCGAACCGAAGTCTCAAATAT
CACATGAGAAGGACGCACGAAAGGTATCACGAGTCAGAGTCCCCGGATGC
GCGGCACATTTGTGAGGAGTGTGGCAAGTGCTTTGCGCGAAAGGCACATC
TAACGCGCCACAAGATGGTCCATGGTAGCGTTGAGGGTCGGAGATACTGC
TGCGAATGCTGCGATCGCAGATTCTACACCAAGGAGAACATGGTGGATCA
TCTGCTGCGCAAGCACGGCAATAAGAATCTGCTGCTCAGATGCAGAAAAT
GCGGACGCATTTTCCAGAACAGCGTGGAGCTCAACGCTCACGGGAGGAAA
CACAAAGCGATGGATGTAGTTCAATAAAAGCTTTCTAGACCAT
BS29886.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:32:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10654-RA | 1161 | CG10654-PA | 1..1161 | 17..1177 | 5805 | 100 | Plus |
| CG10654-RB | 1239 | CG10654-PB | 562..1239 | 500..1177 | 3390 | 100 | Plus |
| CG10654-RB | 1239 | CG10654-PB | 1..484 | 17..500 | 2420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:32:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10654-RA | 1337 | CG10654-RA | 131..1291 | 17..1177 | 5805 | 100 | Plus |
| CG10654-RB | 1805 | CG10654-RB | 692..1369 | 500..1177 | 3390 | 100 | Plus |
| CG10654-RB | 1805 | CG10654-RB | 131..614 | 17..500 | 2420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:32:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12505810..12506487 | 1177..500 | 3390 | 100 | Minus |
| 3L | 28110227 | 3L | 12507227..12507710 | 500..17 | 2420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:32:55 has no hits.
BS29886.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-04 14:18:24 Download gff for
BS29886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10654-RA | 1..1159 | 17..1175 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:39 Download gff for
BS29886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10654-RA | 131..1289 | 17..1175 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:46:26 Download gff for
BS29886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10654-RA | 131..1289 | 17..1175 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:46:26 Download gff for
BS29886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12505812..12506487 | 500..1175 | 100 | <- | Minus |
| 3L | 12507228..12507710 | 17..499 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:39 Download gff for
BS29886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12500328..12500810 | 17..499 | 100 | | Minus |
| arm_3L | 12498912..12499587 | 500..1175 | 100 | <- | Minus |
BS29886.pep Sequence
Translation from 16 to 1176
> BS29886.pep
MPATMFDSQLSLCAGRIVADSTTTTTSGMDGCDGAKTMICRACLVLLGPQ
DACHNLDSEQDLASKYYGCTGEDAVRDLPPQLVLKSICECCYQLVQKFHD
FQRMCAESLRNFEKLLQDIDIGCHKLEDHTWHDLDTPSESNESTNPEAQS
HAPCIAATQEIEEVYVIEDESAKQDLGQEKLSISSKLLGARKRRGVRHTL
ECRICHRGFYKPSLLEAHMQQHEGLRPYTCVHCAKSYARANLLESHLRQM
HNNADAARIIYACPSCNKVYTANRSLKYHMRRTHERYHESESPDARHICE
ECGKCFARKAHLTRHKMVHGSVEGRRYCCECCDRRFYTKENMVDHLLRKH
GNKNLLLRCRKCGRIFQNSVELNAHGRKHKAMDVVQ*
BS29886.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10654-PA | 386 | CG10654-PA | 1..386 | 1..386 | 2108 | 100 | Plus |
| CG10654-PB | 412 | CG10654-PB | 1..412 | 1..386 | 2071 | 93.7 | Plus |
| CG10147-PB | 448 | CG10147-PB | 7..344 | 40..379 | 297 | 27.7 | Plus |
| CG10147-PA | 448 | CG10147-PA | 7..344 | 40..379 | 297 | 27.7 | Plus |
| CG15436-PA | 346 | CG15436-PA | 4..318 | 39..381 | 261 | 26.4 | Plus |
| CG10147-PB | 448 | CG10147-PB | 299..439 | 205..329 | 163 | 26.7 | Plus |
| CG10147-PA | 448 | CG10147-PA | 299..439 | 205..329 | 163 | 26.7 | Plus |
