BS29887.complete Sequence
1535 bp assembled on 2012-05-24
GenBank Submission: KX802816
> BS29887.complete
GAAGTTATCAGTCGACATGCCTTTTAGCAATGAAACGGAAATGAGCCAAT
GTTCCAATGCGAAACGTAGAGTAAACGATCCGTTGACTGGACCAAAAAAC
TGCAGTACTTCGTCCACAGACTCGGGCGTTATACTAAACGATAATGTGGC
GGCATTCCGGCCGGAGAAGGAGACCAAAGATCGGGGGACGGGCGAAGGGC
AGTTCCAATCGAAATCGGAAGAGAAAACGGAATCCAAGCGTATCAGCGTT
GAGCACACTGTCAATATAACAACGGAAAATGTTGGAAAGACATCTTCGCC
GGCGGTTTCCATACGGAGTACCACAATTTCCGTTGTGTCCATCGATGATA
ATGCCATCGACTCGAGTAGTATTGATAGTGATTCGGAGGCCGAAGCGGAG
GATTATACGGTCCAGAAGCTGGGTCACCAGGTCACCTACCCGCCCAACAG
TTCACACCTGCGCGACCTTAACCAGGGTCTAACGGTGATCAGTCGCCATG
TGGCGCCAGGTGAGGCGGCAGTACCACCACCCAATCCCCTGGAAGCTGGC
ATTGTGGCCAAGCAAATACTGAACGGTAATCTGGCCGTGGCCACGCCCAC
ATCGCCGGCGGGCGGTGCCACGCAGGGTATTGGCAGCATCGCCCTGACCA
ACTCCACAGATGTGACGTTCGGTGATAAGCATTTCTACGAGGGACCCGTG
ACGATACAACAGTTTCTCATCGATAATCGGGACAAGTGGAAACCGGGCGA
GGGACCAGCTGGTGGACAGGATAACCCCGCATTCAATGGTGGTCCCAGCA
CGAATGGAAGTGCGCCGGGCTCCAAACACGAAGATCCGGCGCAAACCCCA
CCAATTTGTCCTTTTCTGCCCAACACTGTCGGACGCAAGGCCGTCACAGT
TACAGTGGTTTTTGTAACTTTAACCTTCCTGCTGGGTATCGTACTGGCCA
CCACCACAAATCTCTTCGGAAAGACGTTGAACCAAACGGACTTGGATGTC
ATCGATAATAGCACATTGGTGATCCTAAAAGTAGCCGAGTGGGGCGGAAG
ACCTGCCAAGAGGATGTTGGATGCGCAACAGTTGCCCATCAATCGGGTGG
TCATCTCGCACACCGCCGCTGAGGGTTGCGAATCGAGGGAAGTCTGCTCC
GCCCGGGTGAATGTCGTCCAATCGTTTCACATGGACAGCTGGGGTTGGGA
CCACATAGGCTACAACTTTCTCGTGGGCGGCGATGGCCGTGTGTACGAGG
GGCGTGGCTGGGACTATGTGGGCGCTCACACCAAGGGTTATAATAGAGGA
AGCATTGGTATATCCTTTATTGGAACCTTCACGACAAGAAAACCCAACGA
ACGGCAGTTAGAGGCATGCCAACTGCTTTTGCAAGAGGGCGTTCGTCTTA
AGAAATTGACGACGAATTATCGTCTTTATGGCCATCGTCAACTGAGTGCC
ACGGAGAGTCCCGGGGAGGAGCTCTACAAGATCATTAAAAAGTGGCCGCA
CTGGTCACACGAAATCTAAAAGCTTTCTAGACCAT
BS29887.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:26:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LC-RD | 1503 | CG4432-PD | 1..1503 | 17..1519 | 7515 | 100 | Plus |
| PGRP-LC-RA | 1503 | CG4432-PA | 1..1503 | 17..1519 | 7515 | 100 | Plus |
| PGRP-LC-RC | 1536 | CG4432-PC | 1..972 | 17..988 | 4860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:26:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LC-RD | 1781 | CG4432-RD | 216..1723 | 12..1519 | 7540 | 100 | Plus |
| PGRP-LC-RA | 1876 | CG4432-RA | 311..1818 | 12..1519 | 7540 | 100 | Plus |
| PGRP-LC-RC | 2579 | CG4432-RC | 311..1287 | 12..988 | 4885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:26:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9342323..9343130 | 12..819 | 4040 | 100 | Plus |
| 3L | 28110227 | 3L | 9345823..9346208 | 1134..1519 | 1915 | 99.7 | Plus |
| 3L | 28110227 | 3L | 9344899..9345067 | 818..986 | 845 | 100 | Plus |
| 3L | 28110227 | 3L | 9345609..9345761 | 987..1139 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:26:06 has no hits.
BS29887.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:42 Download gff for
BS29887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LC-RD | 221..1721 | 17..1517 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:56 Download gff for
BS29887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LC-RA | 316..1816 | 17..1517 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:43:09 Download gff for
BS29887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LC-RA | 316..1816 | 17..1517 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:43:09 Download gff for
BS29887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9342328..9343129 | 17..818 | 100 | -> | Plus |
| 3L | 9344900..9345067 | 819..986 | 100 | -> | Plus |
| 3L | 9345609..9345760 | 987..1138 | 100 | -> | Plus |
| 3L | 9345828..9346206 | 1139..1517 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:56 Download gff for
BS29887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9335428..9336229 | 17..818 | 100 | -> | Plus |
| arm_3L | 9338000..9338167 | 819..986 | 100 | -> | Plus |
| arm_3L | 9338709..9338860 | 987..1138 | 100 | -> | Plus |
| arm_3L | 9338928..9339306 | 1139..1517 | 100 | | Plus |
BS29887.pep Sequence
Translation from 16 to 1518
> BS29887.pep
MPFSNETEMSQCSNAKRRVNDPLTGPKNCSTSSTDSGVILNDNVAAFRPE
KETKDRGTGEGQFQSKSEEKTESKRISVEHTVNITTENVGKTSSPAVSIR
STTISVVSIDDNAIDSSSIDSDSEAEAEDYTVQKLGHQVTYPPNSSHLRD
LNQGLTVISRHVAPGEAAVPPPNPLEAGIVAKQILNGNLAVATPTSPAGG
ATQGIGSIALTNSTDVTFGDKHFYEGPVTIQQFLIDNRDKWKPGEGPAGG
QDNPAFNGGPSTNGSAPGSKHEDPAQTPPICPFLPNTVGRKAVTVTVVFV
TLTFLLGIVLATTTNLFGKTLNQTDLDVIDNSTLVILKVAEWGGRPAKRM
LDAQQLPINRVVISHTAAEGCESREVCSARVNVVQSFHMDSWGWDHIGYN
FLVGGDGRVYEGRGWDYVGAHTKGYNRGSIGISFIGTFTTRKPNERQLEA
CQLLLQEGVRLKKLTTNYRLYGHRQLSATESPGEELYKIIKKWPHWSHEI
*
BS29887.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LC-PD | 500 | CG4432-PD | 1..500 | 1..500 | 2627 | 100 | Plus |
| PGRP-LC-PA | 500 | CG4432-PA | 1..500 | 1..500 | 2627 | 100 | Plus |
| PGRP-LC-PC | 511 | CG4432-PC | 1..497 | 1..496 | 2166 | 82.7 | Plus |
| PGRP-LC-PI | 501 | CG4432-PI | 1..501 | 1..497 | 1961 | 76.2 | Plus |
| PGRP-LC-PH | 520 | CG4432-PH | 1..520 | 1..497 | 1952 | 74.4 | Plus |
