BS29888.complete Sequence
1337 bp assembled on 2012-05-24
GenBank Submission: KX802482
> BS29888.complete
GAAGTTATCAGTCGACATGTCGCATCGCGTTCTGGTCATTGGCAGCGGCG
GTCGGGAGCACGCGATCTGCTGGAAGTTGTCGCAATCTCCGAAGGTGGCC
CAAATATACGCACTGCCGGGTAGCCATGGCATCCAGCTGGTGGAGAAGTG
CCGGAATCTGGATGCCAAGACCTTGGATCCTAAGGATTTCGAGGCCATTG
CTAAATGGAGCAAGGAGAACCAGATAGCCCTAGTGGTTGTGGGACCCGAA
GATCCCTTGGCTTTGGGTTTGGGCGATGTGCTGCAGAGCGCTGGAATTCC
CTGCTTTGGACCCGGCAAGCAAGGTGCCCAAATCGAGGCGGACAAGAAGT
GGGCCAAGGACTTTATGCTGCGCCATGGGATTCCCACAGCGCGTTACGAA
AGTTTCACAGACACCGAAAAGGCCAAGGCATTCATAAGAAGCGCTCCGTA
TCCAGCTCTGGTGGTGAAAGCTGCTGGATTGGCCGCCGGAAAGGGCGTGG
TGGTGGCCGCCAATGCGAAGGAGGCCTGCCAGGCGGTGGACGAGATCCTG
GGAGATCTGAAATACGGTCAGGCTGGCGCCACGCTGGTGGTGGAGGAGCT
ACTGGAGGGCGAAGAGGTTTCCGTTCTGGCCTTCACCGATGGCAAAAGTG
TGCGTGCCATGCTGCCAGCGCAGGATCACAAGCGACTGGGCAATGGCGAT
ACTGGACCAAACACCGGCGGCATGGGCGCCTACTGCCCTTGTCCGTTGAT
CAGCCAGCCAGCACTGGAACTGGTGCAAAAGGCCGTGCTGGAGCGGGCTG
TGCAGGGTCTGATCAAGGAGAGGATCAACTACCAGGGTGTACTCTATGCG
GGACTCATGCTGACACGCGATGGTCCCCGTGTGCTGGAGTTTAACTGCCG
GTTTGGAGATCCCGAGACCCAGGTGATTCTGCCGCTGCTCGAAAGCGATC
TGTTCGATGTGATGGAGGCTTGTTGCAGCGGAAAGCTGGACAAGATTCCC
CTGCAATGGCGCAATGGAGTGAGTGCCGTTGGTGTGATCCTGGCCAGTGC
TGGCTATCCGGAGACCTCCACAAAGGGTTGCATCATATCGGGACTTCCGG
CTGCCAATACACCCACCCAACTGGTCTTTCACAGCGGCCTTGCCGTGAAT
GCACAAAAGGAAGCCCTAACCAATGGCGGTCGCGTCCTCATCGCGATCGC
TCTGGACGGCAGCTTGAAGGAGGCTGCTGCGAAGGCAACCAAATTGGCTG
GCAGCATCAGTTTTTCGGGCTCTGGAGCTCAGTACCGAACGGACATTGCC
CAGAAGGCGTTCAAAATGTAAAAGCTTTCTAGACCAT
BS29888.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:26:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ade3-RB | 1305 | CG31628-PB | 1..1305 | 17..1321 | 6525 | 100 | Plus |
| ade3-RC | 4062 | CG31628-PC | 1..1301 | 17..1317 | 6505 | 100 | Plus |
| ade3-RA | 4062 | CG31628-PA | 1..1301 | 17..1317 | 6505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ade3-RB | 1556 | CG31628-RB | 194..1498 | 17..1321 | 6525 | 100 | Plus |
| ade3-RC | 4718 | CG31628-RC | 194..1494 | 17..1317 | 6505 | 100 | Plus |
| ade3-RA | 4480 | CG31628-RA | 194..1494 | 17..1317 | 6505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:26:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7018430..7019082 | 1092..440 | 3265 | 100 | Minus |
| 2L | 23513712 | 2L | 7019135..7019384 | 441..192 | 1250 | 100 | Minus |
| 2L | 23513712 | 2L | 7018145..7018375 | 1321..1091 | 1155 | 100 | Minus |
| 2L | 23513712 | 2L | 7023528..7023705 | 194..17 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:26:09 has no hits.
BS29888.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:42 Download gff for
BS29888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ade3-RB | 236..1538 | 17..1319 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:58 Download gff for
BS29888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ade3-RB | 236..1538 | 17..1319 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:43:11 Download gff for
BS29888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ade3-RB | 194..1496 | 17..1319 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:43:11 Download gff for
BS29888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7018147..7018374 | 1092..1319 | 100 | <- | Minus |
| 2L | 7018431..7019080 | 442..1091 | 100 | <- | Minus |
| 2L | 7019135..7019382 | 194..441 | 100 | <- | Minus |
| 2L | 7023529..7023705 | 17..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:58 Download gff for
BS29888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7018147..7018374 | 1092..1319 | 100 | <- | Minus |
| arm_2L | 7018431..7019080 | 442..1091 | 100 | <- | Minus |
| arm_2L | 7019135..7019382 | 194..441 | 100 | <- | Minus |
| arm_2L | 7023529..7023705 | 17..193 | 100 | | Minus |
BS29888.pep Sequence
Translation from 16 to 1320
> BS29888.pep
MSHRVLVIGSGGREHAICWKLSQSPKVAQIYALPGSHGIQLVEKCRNLDA
KTLDPKDFEAIAKWSKENQIALVVVGPEDPLALGLGDVLQSAGIPCFGPG
KQGAQIEADKKWAKDFMLRHGIPTARYESFTDTEKAKAFIRSAPYPALVV
KAAGLAAGKGVVVAANAKEACQAVDEILGDLKYGQAGATLVVEELLEGEE
VSVLAFTDGKSVRAMLPAQDHKRLGNGDTGPNTGGMGAYCPCPLISQPAL
ELVQKAVLERAVQGLIKERINYQGVLYAGLMLTRDGPRVLEFNCRFGDPE
TQVILPLLESDLFDVMEACCSGKLDKIPLQWRNGVSAVGVILASAGYPET
STKGCIISGLPAANTPTQLVFHSGLAVNAQKEALTNGGRVLIAIALDGSL
KEAAAKATKLAGSISFSGSGAQYRTDIAQKAFKM*
BS29888.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ade3-PB | 434 | CG31628-PB | 1..434 | 1..434 | 2222 | 100 | Plus |
| ade3-PC | 1353 | CG31628-PC | 1..434 | 1..434 | 2218 | 99.8 | Plus |
| ade3-PA | 1353 | CG31628-PA | 1..434 | 1..434 | 2218 | 99.8 | Plus |
