BS29889.complete Sequence
3533 bp assembled on 2012-06-18
GenBank Submission: KX802165
> BS29889.complete
GAAGTTATCAGTCGACATGCTCATAAACCTTAAGGTGAAGACCTTAGATG
CGCGCATCCACGAATTCAGCATCGACAATGAGCTCACCATCCGCCAGTTC
AAGGACCAAATAGCCGAGAAGACTAACATTGCGGCGGAAAACCAGCGTAT
CATCTACCAGGGTCGCGTTCTGGTCGATGATAAGCAGGTGAAGGAATATG
ATGTGGATGGCAAGGTGCTCCATGTGGCCGAACGACCACCATTCTCGCAG
CGCGGAGCCAATGCCCGCAACAATGATGAACCCATGCGAACCTTCCGCAA
TGTGGCACGTCCGCCGCCGCCCGGAATGCGTACTTCTCCGTACTTCCGCG
CCCTCGATGGAATGCTGGTGGGCACCATGGCCATACCGGTGAACAATGGT
CCAGTAGCTGGGACACGTCCTCCACCGAATCGTTATCCCAACTCGTCGTC
CTTCTGCATTAACCGCATCACGGTCGCCCTGCACATGATCGATTGCGCTG
ACAATATAGCAGCTTATCTGGAAAATCCTGCCGTTGGCCTGAACAATCAA
TCACTGGACATTCTGCAGCGCGGTCGCTGGTCGATGGAGTCCACAGTCGT
GGAAGTAGGTGTCTCCTCGACTGATCTGCCACGCAACAATAACATCATCG
ATATGGTCCAAGATGCCGTGACCGCTGCTCTTTCGCATACAGGAGCACGC
AACTATACGGTGGTTCAGCTGCCCACGGTTTATACCAATGAGAATGGCGA
GACGAGCCAGCAGAGAACAGCCGAAGCTATAACAAGTGAGGGAGCAGCCA
GTGGAGCTGCAAGTAATGCTAGTGGTGAAACCACAGCTGCTACTGTGATT
ATCGAGGATGTTATCGAAACGGACGACGAAGTGGCCGATGGAGCATCAGA
TCGTTCGGTCACGCCAACACCAGAGCCGGAGGCGGAAGGAGCAGTTGGTG
GCCAGCAAGTCACTGCAGCAGAGACTCCCACATCCTCGGTTGGATCAGCA
AATGACGCGGCTGCCGAAGGCGGCAACAACTCAGGACCCAGGCGACGCAC
TCGTCCTCAGGTGTTGGCCCAAGTTATTCAGCACTATCGTGGCGTACAGG
CTCGCTTGGCGCCTTTTGTTGATCGGTACTATGAGATTCTCCAGAATGAT
CCCACTTTTGAGGAGAGTGACACCGATGGTCGCGAGAACGCACAGCGCAT
CTTCGATCGCGTCTCGGAGGCTTTCCACTACCTTTCGCACGCCCAGCACG
CTATATCCGATTTAATGCTTGACCTGTCGCAGCCAGGGCCACGTGTGCTC
ACCTGCCGACCCATTCTCGTTGAGCAGAGCGGTTACATACGCTCCAATAA
CATCTTCACGCCCAACTTTTTGGCACCGCCCTCGGGTATTATCAACGAGC
CTTTCCGCAATAGAGCACCTGGTTCTGCCTCTGCAGCTGGCACTCAAACG
GCCACCACAGCGGGCACTCAAACGCCCACCAGCGCGGGCACTCCAACTGC
TGTGGCACCTTCGCAGGCTGCCAATTTGCAGGCGGCCACCGATGCCAGTC
GCAGTGCAGCGGCCATGGCGGAGATCGCCAGTCGAGCTGCTGGAGCCGCT
GCGGAAATGGCTGCCGGAGCTGCCAGTGCGGCTGCTGGAGCTGCGAATGC
GGCTGCCGCCGCCGCTCGCGATTTATCCAGTGATCAAGTAGAGGATCCCA
TCGACGAGCCTATGGTGGGGCCAAATGCTGCAGGTGCTGAAACACTAGCA
CAAGAGCAACAGCGTCTCGAAATGGATCCCCAATTGGAAATGGCCCGAAT
TATTCAGGCAATGGTCAATGGTCAACGACCGAACGATATCCATGTGGAAT
TCAATGCCCCCAACGTCATGTCGATTAACTTGCCCGTGCATGTGATGACG
ACCGTGCGACAGGCTCCGGCAGCTGGATCGAACGAAACAGCAGATCAGTC
TGCGTCCGAATCCTCCTCCCCTGAAAGTGCGCCTGCGTCGGGCAATGGAG
AGTCTCCAAATGCAGCTTCAACATCAAGTGGAACACGCAGTGGCGATCAG
AGGGCCAATACCTTGCCCACCACGGCCACCCAAACGCGCTCGACATCAAG
ACCACAGATTCAGATTGGCGGAAACAACAACTGGGGCGGACGCATTGCTC
CGACACACACGGCATTCGACCGCTTTCTGCCTTGCAATAGTCATCACATT
CGGGAACCAGAGCAGCTGCTCCAAAACAACAGTACCAGTCGCAGCACCTC
GACAGCACCAGCAGGAGGAGCCACCGTTGTTCCGCCCACATCTGCTGCAG
TAACTCGTCCTGCTTCGGTAGGCAGTGCAGTTGCCGCCGTCGGAGATACG
GCCGCCTCACCATCAGGAGAAGCTGCCCCAATTGCTTCAACCACGCCAGC
TGCTCCGCTACAAACTGTTTTGCCGACATCCACACCCACTCCTCGCGGAG
ACTCGAACAACCTGCGTTCGCAACTGCGCACCTTCCTCAACGACAGCCTG
TTTGTCGGAGTACCCATCAACGAGCAGACTATTCCGGGGGCCATTGGTCG
CGCACTAGACTGGTTCGGGGAGAGCCTGGTCTACCTGCCGCAGTACGAGC
GTCCGGAGTACAACTCGCGCGACTCTGTGTGCAACATCCTGCGTGTCAGC
CTCCGTTTGATCATCGAGCTTTGTAATGGAGCTCCGGCCGGTGTAGATAG
TGCTCAATTCGAGCAAAGTCTCAAACAGATTTGTGACCAATTCCGCAAGC
GGCTATACAGCGTTCTCTTCCTGTGCCTTGGAAGCGCGAATGCGGAGCTC
TATTGGCGCCAGCTAATGCGCCTCCTTTGCGCACCGATGCGATCCAACTT
CCGCAACGAAGCCCTGCAGTTTTTGTGCATCTACATAGACCCCACGATTC
CCGCCCAAACTGACACAGTGGATGCCCAACAGTTCCTGGTCTTGCGCAGC
ATTCAAGCAGCTCCTCCAACAGCTGCCGACGAGCAGCAGCTGCAAGAGCA
AACTCTGGACACGGATGTTGAGATGTCCGAAGTGACCGCCAGCGGCAGCA
ACAGTTCACCGGCAGACGAGCTACCAGCTGTGATTGTGGGCTCAGAGCCT
TGGCACATGAGTTTCCCCAATGATTGGTTGCCTGTGATAACGCGCGACCT
ACAGACCCAGGCAGAGCAGAGTAATCGTCCCCAGCCGCCCTTCTCGGATG
CCTACATCTCGGGCATGTCCGCCAAGCGCCGCAAGATAATTCAGTCGGAA
AAGCCGACTGCCAGCGTGGAGTGTCTCATTGCTAATGGAGTGCAGAGGGC
TATCCAGAGCGTCGGCTTGGGTGGAAGCAATGGTGGTAGCGCCTTAAACG
CGTCGATCAGTATGGATACCGTAATCGGATCCATTGCTCACGACTCCACC
ATTCAGGCCGCCTACACGGATGCGGTGCGCAATAGTTTAAAAGAGCGTAC
CGAGCGGGATGTGGATTTTAAGACCAGCAAGTATCCGCAGATTGCCAAGT
TCACCGAGCAAAAGTAGAAGCTTTCTAGACCAT
BS29889.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7546-RB | 3501 | CG7546-PB | 1..3501 | 17..3517 | 17505 | 100 | Plus |
| CG7546-RF | 3504 | CG7546-PF | 1..3504 | 17..3517 | 17440 | 99.9 | Plus |
| CG7546-RG | 3540 | CG7546-PG | 1..2968 | 17..2984 | 14840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:35:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7546-RB | 4742 | CG7546-RB | 392..3892 | 17..3517 | 17505 | 100 | Plus |
| CG7546-RF | 4745 | CG7546-RF | 392..3895 | 17..3517 | 17440 | 99.9 | Plus |
| CG7546-RG | 4781 | CG7546-RG | 392..3359 | 17..2984 | 14840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7511972..7512729 | 412..1169 | 3790 | 100 | Plus |
| 3L | 28110227 | 3L | 7512786..7513392 | 1169..1775 | 3035 | 100 | Plus |
| 3L | 28110227 | 3L | 7513817..7514354 | 1775..2312 | 2690 | 100 | Plus |
| 3L | 28110227 | 3L | 7515047..7515581 | 2312..2846 | 2675 | 100 | Plus |
| 3L | 28110227 | 3L | 7516114..7516466 | 3165..3517 | 1765 | 100 | Plus |
| 3L | 28110227 | 3L | 7511704..7511916 | 200..412 | 1065 | 100 | Plus |
| 3L | 28110227 | 3L | 7515866..7516050 | 2982..3166 | 925 | 100 | Plus |
| 3L | 28110227 | 3L | 7515641..7515777 | 2847..2983 | 685 | 100 | Plus |
| 3L | 28110227 | 3L | 7511509..7511628 | 81..200 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 7511377..7511442 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:35:28 has no hits.
BS29889.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-18 13:51:03 Download gff for
BS29889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7546-RC | 388..2146 | 17..1775 | 100 | <- | Plus |
| CG7546-RC | 2245..3987 | 1776..3517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:41 Download gff for
BS29889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7546-RB | 392..3892 | 17..3517 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:47:21 Download gff for
BS29889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7546-RB | 392..3892 | 17..3517 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:47:21 Download gff for
BS29889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7511377..7511442 | 17..82 | 100 | -> | Plus |
| 3L | 7511511..7511628 | 83..200 | 100 | -> | Plus |
| 3L | 7511705..7511916 | 201..412 | 100 | -> | Plus |
| 3L | 7511973..7512728 | 413..1168 | 100 | -> | Plus |
| 3L | 7512786..7513392 | 1169..1775 | 100 | -> | Plus |
| 3L | 7513818..7514354 | 1776..2312 | 100 | -> | Plus |
| 3L | 7515048..7515581 | 2313..2846 | 100 | -> | Plus |
| 3L | 7515641..7515777 | 2847..2983 | 100 | -> | Plus |
| 3L | 7515868..7516050 | 2984..3166 | 100 | -> | Plus |
| 3L | 7516116..7516466 | 3167..3517 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:41 Download gff for
BS29889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7504477..7504542 | 17..82 | 100 | -> | Plus |
| arm_3L | 7504611..7504728 | 83..200 | 100 | -> | Plus |
| arm_3L | 7504805..7505016 | 201..412 | 100 | -> | Plus |
| arm_3L | 7505073..7505828 | 413..1168 | 100 | -> | Plus |
| arm_3L | 7505886..7506492 | 1169..1775 | 100 | -> | Plus |
| arm_3L | 7506918..7507454 | 1776..2312 | 100 | -> | Plus |
| arm_3L | 7508148..7508681 | 2313..2846 | 100 | -> | Plus |
| arm_3L | 7508741..7508877 | 2847..2983 | 100 | -> | Plus |
| arm_3L | 7508968..7509150 | 2984..3166 | 100 | -> | Plus |
| arm_3L | 7509216..7509566 | 3167..3517 | 100 | | Plus |
BS29889.pep Sequence
Translation from 16 to 3516
> BS29889.pep
MLINLKVKTLDARIHEFSIDNELTIRQFKDQIAEKTNIAAENQRIIYQGR
VLVDDKQVKEYDVDGKVLHVAERPPFSQRGANARNNDEPMRTFRNVARPP
PPGMRTSPYFRALDGMLVGTMAIPVNNGPVAGTRPPPNRYPNSSSFCINR
ITVALHMIDCADNIAAYLENPAVGLNNQSLDILQRGRWSMESTVVEVGVS
STDLPRNNNIIDMVQDAVTAALSHTGARNYTVVQLPTVYTNENGETSQQR
TAEAITSEGAASGAASNASGETTAATVIIEDVIETDDEVADGASDRSVTP
TPEPEAEGAVGGQQVTAAETPTSSVGSANDAAAEGGNNSGPRRRTRPQVL
AQVIQHYRGVQARLAPFVDRYYEILQNDPTFEESDTDGRENAQRIFDRVS
EAFHYLSHAQHAISDLMLDLSQPGPRVLTCRPILVEQSGYIRSNNIFTPN
FLAPPSGIINEPFRNRAPGSASAAGTQTATTAGTQTPTSAGTPTAVAPSQ
AANLQAATDASRSAAAMAEIASRAAGAAAEMAAGAASAAAGAANAAAAAA
RDLSSDQVEDPIDEPMVGPNAAGAETLAQEQQRLEMDPQLEMARIIQAMV
NGQRPNDIHVEFNAPNVMSINLPVHVMTTVRQAPAAGSNETADQSASESS
SPESAPASGNGESPNAASTSSGTRSGDQRANTLPTTATQTRSTSRPQIQI
GGNNNWGGRIAPTHTAFDRFLPCNSHHIREPEQLLQNNSTSRSTSTAPAG
GATVVPPTSAAVTRPASVGSAVAAVGDTAASPSGEAAPIASTTPAAPLQT
VLPTSTPTPRGDSNNLRSQLRTFLNDSLFVGVPINEQTIPGAIGRALDWF
GESLVYLPQYERPEYNSRDSVCNILRVSLRLIIELCNGAPAGVDSAQFEQ
SLKQICDQFRKRLYSVLFLCLGSANAELYWRQLMRLLCAPMRSNFRNEAL
QFLCIYIDPTIPAQTDTVDAQQFLVLRSIQAAPPTAADEQQLQEQTLDTD
VEMSEVTASGSNSSPADELPAVIVGSEPWHMSFPNDWLPVITRDLQTQAE
QSNRPQPPFSDAYISGMSAKRRKIIQSEKPTASVECLIANGVQRAIQSVG
LGGSNGGSALNASISMDTVIGSIAHDSTIQAAYTDAVRNSLKERTERDVD
FKTSKYPQIAKFTEQK*
BS29889.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:04:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7546-PB | 1166 | CG7546-PB | 1..1166 | 1..1166 | 5929 | 100 | Plus |
| CG7546-PF | 1167 | CG7546-PF | 1..1167 | 1..1166 | 5917 | 99.9 | Plus |
| CG7546-PG | 1179 | CG7546-PG | 1..1179 | 1..1166 | 5887 | 98.7 | Plus |
| CG7546-PC | 1199 | CG7546-PC | 1..1199 | 1..1166 | 5885 | 97.2 | Plus |
| CG7546-PE | 1298 | CG7546-PE | 1..769 | 1..769 | 3894 | 99.6 | Plus |
