BS29893.complete Sequence
3530 bp assembled on 2012-06-18
GenBank Submission: KX801460
> BS29893.complete
GAAGTTATCAGTCGACATGGGCGAGTTCTTTAAGTCGCTCAACCTCAACT
ACTTCTCCTCTAGCGAGGTCAACGGAGCTGCAGGAAACGGAGCACCAGAG
GCCCTCGGTGGCAGGCTGGACAATGACTTCGTGGGCCAGGTCGTTGAAGT
CGCTGGACACAGGCTGCGCATCAAGTGTGTCATCGCCGAAGGCGGATACG
CCTTCGTGTATGTAGCCCAAGATGTGCAAACTGGCACAGAATACGCCCTC
AAGCGTCTGATCGGGGCTGACATGCAAGCCTCCACCGCCATCATCAACGA
GATCAACATCCACAAGCAGCTGTCGGGGCACGAGAACATTGTCGCCTTTG
TGGGTTCCAGTTATACCGCCCCATCAACTCAATTGGGAGCCCAGTACTTG
CTCCTCACCGAGCTGTGTAAAGGCGGATCTCTGGTGGACTGCTTCAGAAC
AAACAATGCTCCATTCAATCCGACTTGTGTTCTGCGCATCTTCTACCAAA
TGGCGCGGGCTGTGGCCAGCTTGCACTCACAGTCACCGCCGATAGCCCAC
CGAGATATAAAGATTGAGAACTTTCTCATTGGCAACGACAAACAGATCAA
GCTGTGCGACTTTGGGTCCGCCAGCACGGAGGTCCTGTCGCCCACGTTTG
AGTGGAGCGCCAACCAGCGCAGCATGCTGGAGGACCAGCTAAACACTGTT
ACTACTCCGATGTACCGATCCCCTGAGATGCTCGACACTTGGTCCAACAA
CCCGATTGGGCCCAAAGTGGACATATGGGCTCTCGGATGCATTCTCTACT
TCCTGTGCTACCGCAAGCATCCCTACGAGGATGGCGGAAAGCTGCGGATC
ATTAACGCCAATTACATGCTTCCGCCAGATCCTCAGTACCAGTGCTTCAG
CGATATAATCCGTGGCTGTTTAAAAGTGAACCCGTTCGAGCGCCTGGATA
TTACTATGGTGCTGGAGGGCCTTGCAGCCCTCGCTGAGACACACAATTGG
TCGCTCAAAGGACCTCTAGACCTTCATATAATGCCCATCGAGTCCCTTCC
GGCCGAAAGTCCTCTCAAAAGTTCTGCTTACTCTGAGGTTTACACCGAAC
CGCTTTCTGCCGCCATACCATCATCTTATAATGGACACGGCAGTCTTCTG
TCGTCACTGCGTGGTGGCGCTGGAACGCTTTTAAAGAACATTAAAGATAC
GTCCACCAAAGTGATGCAAACAATGCAGCAATCTCTTGCTCGCAACGATC
TTGATATAAGCCACATTACCTCTCGCATCCTGGTAATGCCCTGCCCCTCT
GACGGATTCGAGTCGACGTACAAGACGAACAACATCGAAGACGTCCGACT
ATCTCTGGAGAGCCGATTTGTCCCACAAAAATTAAGCATTTACAACTTTG
GCCAACGAACAGAGCCACGGCTACCGCCACCCGTGCGAACAGTTGAGGCA
GGTTCGGTTTATGGGTGCCCACAGGCACATGCTCCTAATCTGCAGGGCCT
TTTTACCGTATCAGCCGACATGTACAATTTTCTAAATGCGGACCCCAAAT
CTGTCGTTATCGTGCAGACTGGAGACTCGGGTGGATGCACTGCTGCCACC
GTTATATGCGCGCTTCTTATGTATGCAGATTTGCTGCGGGAGCCGGAGGA
CGCGGTGCAAGTCTTCGCCGTTAAGCGGCATACCATTAACCTCCGCCCCT
CCGAGTTCCGTTACCTGTATTACTTCGGTGACATCCTGCGGCCCACGCCC
CTGCTGCCGCACTATAAGAACACAACCCTTGTTTCACTCAGCTGCCAGCC
TGTGCCCAGAATGACCAAGGCACGCGACGGCTGTAGGATCTATATGGAGG
TTTATTGTAATGGAAACTTGCTACTCAGCACTCTACAGGACTATGAAAAA
ATGCGGTTGTATCAGGCCGGCCCCGGCAAAATAGTTCTGCCGATTAACTT
GACCGCATGCGGTGATGTGACAGTGGTATTATTTCACGCCCGCAAAGGAA
TGGTGCGACCACAAGGCCTCAAGATATGTCAGTTCCAATTCAACACGGGA
TTCATCCCCGAACCAGAAACGTTGATTACATTCACAAACCAGGACTTGGA
TGATCTGCCAGACCCTGAGCAGGTGACACCTCGGTTCTGCGTTTCACTTT
CTCTGGCTGTTACTGACTCGGAATCACCTCCCAGCCATAAGCCACCATGG
ATGCCAGCCAAGCCCAAGCGGTCACCCGCCGCTTTGTTCAGCTCAGATTT
GGAGTATGCAGAAATGCTCGACAATTTTGTAACCAAGCCTAGCACGCGTT
CCTCACCACCACCAGGTGCCCGCAAGAGTGATCGCGTCAGCTCTCCGCTC
GTTTTGCCCGACGTCACGGAGACCGCCCACGAACTGCCTTCGCCCATGCC
AGAGCCATCTCCGCCCATAGACTTGCTCAATTTAAACCAGCAGCCCAGTG
ACGTACCAGCAGCAGATCCGTTAACCAGCGCTAAGCCCAGCACAGATGCC
AGCTTTGACTTGCTAGGGGCCTTCGGTGATGATGACTCTACGGGCATAGG
ATCTGCGCCAATTCCTGACATACTGCCACCACCGCCACTGCAGCAGCCGC
AACCAAAAATAAACAATGACCCATTCGACATATTTGGATCTGTGGACCAA
GGTGGCGTGCCCAGCATGAAGCCATCAGGCTTTCCACCTTTCGTTGGCTC
CTTACCAACTTTTGTTGCTCAGCCAGCGGCTACCACCAATCCTTCACCAA
CTCATCCGGCAAGGGCATCTGCAGATCCATTTGCGAACATCGCCGACCTG
GCGACAGGGCTCAACTTAAACTTTAACCGCAGCACGCTAAGTGGAAAGTC
TCCCGTCAACACTAGTCCGCAGCCTACTCAGTTCTCAAGCCCCACTCACA
AGCCATCGCCATCCTCGCAACCACAAGCAACGTTTATGCATACACCGCCG
ACACCGCAGACTCTGCCCTCGACATCGTCTATCAGGACGCCGACGCAGCC
ACAGGCGGTACCTGCTCAATCAAGACCAGACTACAGTCGACTTCACTTTG
ATTCTCAGAAAGCAGCCCAGCAACCGGGCACTGGCGGGTCCAAGAACTCT
GACATATTTGCTGACATTCTGGGCCAACAAGGATACTCCTTTGGCAGCAA
AATGAACCAGTGTCCACGATCCATCAATGAAATGCGCAAGGAAGATTTGT
TCAAGGATATGGACCCGAAGAAAGTGCGGATTATGGAATGGACTGATGGT
AAGAAAAACAACATCCGTGCGCTTCTCTGCTCTATGCACACAGTGTTGTG
GGACAATGCCAAGTGGCAGCGCTGCGAGATGTCCACCATGGTGACACCGA
CCGAGGTTAAGAAAGCATACCGTCGCGCCTGCCTAGCAGTGCATCCTGAT
AAGCATAATGGAACAGAGAATGAAGAGATTGCCAAGCTTATATTTATGGA
ACTAAACAACGCATGGACAGATTTTGAAAACGATGCCACGCAGCAAAATA
TGTTTAATGCGTAAAAGCTTTCTAGACCAT
BS29893.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:35:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aux-RB | 3498 | CG1107-PB | 1..3498 | 17..3514 | 17490 | 100 | Plus |
| aux-RA | 3498 | CG1107-PA | 1..3498 | 17..3514 | 17490 | 100 | Plus |
| aux-RD | 3474 | CG1107-PD | 174..3474 | 214..3514 | 16505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:35:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aux-RB | 4312 | CG1107-RB | 158..3657 | 17..3516 | 17500 | 100 | Plus |
| aux-RA | 4410 | CG1107-RA | 256..3755 | 17..3516 | 17500 | 100 | Plus |
| aux-RD | 4288 | CG1107-RD | 331..3633 | 214..3516 | 16515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4225497..4226459 | 2279..3241 | 4815 | 100 | Plus |
| 3R | 32079331 | 3R | 4222256..4223191 | 561..1496 | 4680 | 100 | Plus |
| 3R | 32079331 | 3R | 4224597..4225010 | 1494..1907 | 2070 | 100 | Plus |
| 3R | 32079331 | 3R | 4225065..4225439 | 1905..2279 | 1875 | 100 | Plus |
| 3R | 32079331 | 3R | 4221754..4221987 | 190..423 | 1170 | 100 | Plus |
| 3R | 32079331 | 3R | 4221143..4221318 | 17..192 | 880 | 100 | Plus |
| 3R | 32079331 | 3R | 4226529..4226691 | 3241..3403 | 815 | 100 | Plus |
| 3R | 32079331 | 3R | 4222056..4222201 | 421..566 | 715 | 99.3 | Plus |
| 3R | 32079331 | 3R | 4226749..4226863 | 3402..3516 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:35:33 has no hits.
BS29893.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-18 13:51:03 Download gff for
BS29893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aux-RB | 147..3642 | 17..3512 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:43 Download gff for
BS29893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aux-RA | 256..3751 | 17..3512 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:47:23 Download gff for
BS29893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aux-RA | 256..3751 | 17..3512 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:47:23 Download gff for
BS29893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4221756..4221986 | 192..422 | 100 | -> | Plus |
| 3R | 4222058..4222197 | 423..562 | 100 | -> | Plus |
| 3R | 4224599..4225008 | 1496..1905 | 100 | -> | Plus |
| 3R | 4225066..4225439 | 1906..2279 | 100 | -> | Plus |
| 3R | 4222258..4223190 | 563..1495 | 100 | -> | Plus |
| 3R | 4221143..4221317 | 17..191 | 100 | -> | Plus |
| 3R | 4225498..4226459 | 2280..3241 | 100 | -> | Plus |
| 3R | 4226530..4226691 | 3242..3403 | 100 | -> | Plus |
| 3R | 4226751..4226859 | 3404..3512 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:43 Download gff for
BS29893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 47478..47708 | 192..422 | 100 | -> | Plus |
| arm_3R | 47780..47919 | 423..562 | 100 | -> | Plus |
| arm_3R | 46865..47039 | 17..191 | 100 | -> | Plus |
| arm_3R | 47980..48912 | 563..1495 | 100 | -> | Plus |
| arm_3R | 50321..50730 | 1496..1905 | 100 | -> | Plus |
| arm_3R | 50788..51161 | 1906..2279 | 100 | -> | Plus |
| arm_3R | 51220..52181 | 2280..3241 | 100 | -> | Plus |
| arm_3R | 52252..52413 | 3242..3403 | 100 | -> | Plus |
| arm_3R | 52473..52581 | 3404..3512 | 100 | | Plus |
BS29893.pep Sequence
Translation from 16 to 3513
> BS29893.pep
MGEFFKSLNLNYFSSSEVNGAAGNGAPEALGGRLDNDFVGQVVEVAGHRL
RIKCVIAEGGYAFVYVAQDVQTGTEYALKRLIGADMQASTAIINEINIHK
QLSGHENIVAFVGSSYTAPSTQLGAQYLLLTELCKGGSLVDCFRTNNAPF
NPTCVLRIFYQMARAVASLHSQSPPIAHRDIKIENFLIGNDKQIKLCDFG
SASTEVLSPTFEWSANQRSMLEDQLNTVTTPMYRSPEMLDTWSNNPIGPK
VDIWALGCILYFLCYRKHPYEDGGKLRIINANYMLPPDPQYQCFSDIIRG
CLKVNPFERLDITMVLEGLAALAETHNWSLKGPLDLHIMPIESLPAESPL
KSSAYSEVYTEPLSAAIPSSYNGHGSLLSSLRGGAGTLLKNIKDTSTKVM
QTMQQSLARNDLDISHITSRILVMPCPSDGFESTYKTNNIEDVRLSLESR
FVPQKLSIYNFGQRTEPRLPPPVRTVEAGSVYGCPQAHAPNLQGLFTVSA
DMYNFLNADPKSVVIVQTGDSGGCTAATVICALLMYADLLREPEDAVQVF
AVKRHTINLRPSEFRYLYYFGDILRPTPLLPHYKNTTLVSLSCQPVPRMT
KARDGCRIYMEVYCNGNLLLSTLQDYEKMRLYQAGPGKIVLPINLTACGD
VTVVLFHARKGMVRPQGLKICQFQFNTGFIPEPETLITFTNQDLDDLPDP
EQVTPRFCVSLSLAVTDSESPPSHKPPWMPAKPKRSPAALFSSDLEYAEM
LDNFVTKPSTRSSPPPGARKSDRVSSPLVLPDVTETAHELPSPMPEPSPP
IDLLNLNQQPSDVPAADPLTSAKPSTDASFDLLGAFGDDDSTGIGSAPIP
DILPPPPLQQPQPKINNDPFDIFGSVDQGGVPSMKPSGFPPFVGSLPTFV
AQPAATTNPSPTHPARASADPFANIADLATGLNLNFNRSTLSGKSPVNTS
PQPTQFSSPTHKPSPSSQPQATFMHTPPTPQTLPSTSSIRTPTQPQAVPA
QSRPDYSRLHFDSQKAAQQPGTGGSKNSDIFADILGQQGYSFGSKMNQCP
RSINEMRKEDLFKDMDPKKVRIMEWTDGKKNNIRALLCSMHTVLWDNAKW
QRCEMSTMVTPTEVKKAYRRACLAVHPDKHNGTENEEIAKLIFMELNNAW
TDFENDATQQNMFNA*
BS29893.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aux-PB | 1165 | CG1107-PB | 1..1165 | 1..1165 | 6157 | 100 | Plus |
| aux-PA | 1165 | CG1107-PA | 1..1165 | 1..1165 | 6157 | 100 | Plus |
| aux-PD | 1157 | CG1107-PD | 1..1157 | 1..1165 | 6094 | 99.3 | Plus |
| aux-PC | 1153 | CG1107-PC | 1..1153 | 1..1165 | 6070 | 99 | Plus |
| Nak-PC | 698 | CG10637-PC | 32..347 | 36..354 | 398 | 34.9 | Plus |
