Clone BS29916 Report

Search the DGRC for BS29916

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:299
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG5708-RA
Protein status:BS29916.pep: full length peptide match
Sequenced Size:758

Clone Sequence Records

BS29916.complete Sequence

758 bp assembled on 2012-05-24

GenBank Submission: KX806405

> BS29916.complete
GAAGTTATCAGTCGACATGAATGCAACGTTCCATTCATACAGAGACATAC
TAGCGGCACATCACCAAGACTCATCTAGTCCTGAGAACTTCGCCCCCATA
GTAATTGACTATAGAAACTCAAACCACACAAAGGACACTGTGGAGACCAA
CTCGAATATCTCATCGTCTCAGCTATCGTTCATGGACGAATCTTCAAACG
ATTTCAATAATCAGCAGTTAATTCATTCCAACTCCCTTATTAAAGTGTGT
GGTGGTTGTGGAGATAAAATAAGTGATAGATATCTTTTATACGCTTTGGA
CAGATACTGGCACAATGGCTGCCTTAAATGTCACTGCTGTGGAGCTATGC
TAGCAGAAGTGGGTTCCAGCTGTTTTACGAGGCGAGGCCTGATTCTTTGC
AAAAAGGACTATTCCAGCATGTTCGGGTGCTCCGGAGTTTGTTCTGGCTG
CGGAGAAACTATACCGCCAAGTGAACTGGTAGCGAAAGCACTTACTGGAA
TAAATAATATCGATTTACAAAATCAACAAAAACAAATAATTAATTGCGTA
TTTCATCTAAGGTGCTTTAGTTGTGCTAAGTGTGGATCCAGTCTGCGTCC
TGGTGATAGGTATACTATGTTAGGAGCTAGCTTGGTGTGTGAACAAGATT
GGCACAAATTACTTAAGGGCCCCGCCAACTCGAATGGAACGCTTGGACAA
AGGAAAGGAAAGGTCGGTAGGCCCAGAAGATCAAAGGACTAAAAGCTTTC
TAGACCAT

BS29916.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5708-RC 726 CG5708-PC 1..726 17..742 3630 100 Plus
CG5708-RB 726 CG5708-PB 1..726 17..742 3630 100 Plus
CG5708-RA 726 CG5708-PA 1..726 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5708-RC 1326 CG5708-RC 298..1023 17..742 3630 100 Plus
CG5708-RB 1036 CG5708-RB 206..931 17..742 3630 100 Plus
CG5708-RA 1128 CG5708-RA 298..1023 17..742 3630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10225500..10225750 267..17 1240 99.6 Minus
2L 23513712 2L 10224954..10225155 613..412 1010 100 Minus
2L 23513712 2L 10225279..10225434 417..262 780 100 Minus
2L 23513712 2L 10224760..10224894 742..608 675 100 Minus
Blast to na_te.dros performed 2014-11-28 11:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
Doc 4725 Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). 4687..4724 499..536 109 76.3 Plus

BS29916.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:45 Download gff for BS29916.complete
Subject Subject Range Query Range Percent Splice Strand
CG5708-RB 206..929 17..740 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:05 Download gff for BS29916.complete
Subject Subject Range Query Range Percent Splice Strand
CG5708-RA 298..1021 17..740 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:43:16 Download gff for BS29916.complete
Subject Subject Range Query Range Percent Splice Strand
CG5708-RA 298..1021 17..740 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:43:16 Download gff for BS29916.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10224762..10224892 610..740 100 <- Minus
2L 10224958..10225149 418..609 100 <- Minus
2L 10225279..10225432 264..417 100 <- Minus
2L 10225504..10225750 17..263 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:05 Download gff for BS29916.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10224762..10224892 610..740 100 <- Minus
arm_2L 10225279..10225432 264..417 100 <- Minus
arm_2L 10224958..10225149 418..609 100 <- Minus
arm_2L 10225504..10225750 17..263 100   Minus

BS29916.pep Sequence

Translation from 16 to 741

> BS29916.pep
MNATFHSYRDILAAHHQDSSSPENFAPIVIDYRNSNHTKDTVETNSNISS
SQLSFMDESSNDFNNQQLIHSNSLIKVCGGCGDKISDRYLLYALDRYWHN
GCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSGVCSGCGETIP
PSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYT
MLGASLVCEQDWHKLLKGPANSNGTLGQRKGKVGRPRRSKD*

BS29916.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5708-PC 241 CG5708-PC 1..241 1..241 1312 100 Plus
CG5708-PB 241 CG5708-PB 1..241 1..241 1312 100 Plus
CG5708-PA 241 CG5708-PA 1..241 1..241 1312 100 Plus
Bx-PC 313 CG44425-PC 52..227 29..229 335 34.8 Plus
Bx-PA 313 CG44425-PA 52..227 29..229 335 34.8 Plus