BS29917.complete Sequence
1040 bp assembled on 2012-05-24
GenBank Submission: KX802369
> BS29917.complete
GAAGTTATCAGTCGACATGTCGAAACTCATCCGTTGGGGAATCGCTTCCG
CCGGCAAGATCAGCGAGGACTTTGTCATCGCCCTCAGCACCCTGCCCTCC
AGCGACCACAAGGTCCAGGCTGTAGCCGCCCGAGCTCTTGATCGCGCCCA
GGAGTTCGCCACCAAGCACGGCATTCCCAAGGCCCTCGGAAGCTACGAGG
AGCTGGCCAAGAGCACCGATGTCGATGTGGTCTACATTGGCACCCTGAAT
CCCCAGCACTACGAGGTCGCCTTGCTGATGCTGAACAATGGCAAGCATGT
TCTCTGCGAGAAGCCGTTGGCCATGAACAAGAAGCAGGTGGAGGGCATCC
TGGCCGCTGCCAAGGCCAACAAGCGCTTCTTCATGGAGGCCGTGTGGTCG
CGATTCTTCCCCTCGTACCAGCGCGTTAAGGAGCTCATCTCCAGCGGACA
GCTGGGCCAAGTCAAGGATGTGGAGGTCAACTTTGGCTTCCCTATGCCTC
ATGTCGACCGCTTGCAGAAACGCGAACTGGGAGGCGGTGTGGTCTACGAT
CTGGGCATTTACACCATCCAGGTCTCGCAGTGGGCCTTCCAGGAGAAACC
GGAGAAGATCGAGTCCAAGGGAACCCTGAACGCCGAGGGCATCGACGATG
ATGTTAGTGCCACCTTGACCTACAGTGGTGGGCGCACTGCTCGCATGCGC
TTCTCCTCCAAGGAGAAGTTGGGAAACACCGCCGTTATCAAGGGCACCAA
AGGACAAGTTACCCTGATTGACTTCTGGTCGCCCAACAAGCTCATCGACA
TCGATGGCCAGGAGAAGGAGTGGCTGCCTCCCAAGGGCAAGTACGCGACC
AACTACGCCAACTCCGAGGCCATGCGCTATGAGGCGGAGGCAGTGCGCCA
GTCCATCATCGCCGGCGAAGTGGAGAACAAGAACGTCACCTACGCCGACA
GTTTGATCTTCGCCGAGATCGAGGACACCATCCGCAAGCAGATCGGTGTG
CTGAACAAGTACGATGAGCAGTAAAAGCTTTCTAGACCAT
BS29917.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3609-RC | 1008 | CG3609-PC | 1..1008 | 17..1024 | 5040 | 100 | Plus |
| CG3609-RB | 1008 | CG3609-PB | 1..1008 | 17..1024 | 5040 | 100 | Plus |
| CG3609-RA | 1008 | CG3609-PA | 1..1008 | 17..1024 | 5040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:26:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3609-RC | 1210 | CG3609-RC | 146..1156 | 15..1025 | 5055 | 100 | Plus |
| CG3609-RB | 1099 | CG3609-RB | 35..1045 | 15..1025 | 5055 | 100 | Plus |
| CG3609-RA | 1223 | CG3609-RA | 159..1169 | 15..1025 | 5055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2373133..2373426 | 517..224 | 1470 | 100 | Minus |
| 2L | 23513712 | 2L | 2372509..2372770 | 1025..764 | 1310 | 100 | Minus |
| 2L | 23513712 | 2L | 2372830..2373076 | 763..517 | 1235 | 100 | Minus |
| 2L | 23513712 | 2L | 2373494..2373703 | 224..15 | 1050 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:26:29 has no hits.
BS29917.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:46 Download gff for
BS29917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3609-RB | 30..1035 | 17..1022 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:07 Download gff for
BS29917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3609-RA | 161..1166 | 17..1022 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:43:17 Download gff for
BS29917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3609-RA | 161..1166 | 17..1022 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:43:17 Download gff for
BS29917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2372512..2372770 | 764..1022 | 100 | <- | Minus |
| 2L | 2372830..2373076 | 517..763 | 100 | <- | Minus |
| 2L | 2373134..2373425 | 225..516 | 100 | <- | Minus |
| 2L | 2373494..2373701 | 17..224 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:07 Download gff for
BS29917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2373494..2373701 | 17..224 | 100 | | Minus |
| arm_2L | 2372512..2372770 | 764..1022 | 100 | <- | Minus |
| arm_2L | 2372830..2373076 | 517..763 | 100 | <- | Minus |
| arm_2L | 2373134..2373425 | 225..516 | 100 | <- | Minus |
BS29917.pep Sequence
Translation from 16 to 1023
> BS29917.pep
MSKLIRWGIASAGKISEDFVIALSTLPSSDHKVQAVAARALDRAQEFATK
HGIPKALGSYEELAKSTDVDVVYIGTLNPQHYEVALLMLNNGKHVLCEKP
LAMNKKQVEGILAAAKANKRFFMEAVWSRFFPSYQRVKELISSGQLGQVK
DVEVNFGFPMPHVDRLQKRELGGGVVYDLGIYTIQVSQWAFQEKPEKIES
KGTLNAEGIDDDVSATLTYSGGRTARMRFSSKEKLGNTAVIKGTKGQVTL
IDFWSPNKLIDIDGQEKEWLPPKGKYATNYANSEAMRYEAEAVRQSIIAG
EVENKNVTYADSLIFAEIEDTIRKQIGVLNKYDEQ*
BS29917.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:38:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3609-PC | 335 | CG3609-PC | 1..335 | 1..335 | 1712 | 100 | Plus |
| CG3609-PB | 335 | CG3609-PB | 1..335 | 1..335 | 1712 | 100 | Plus |
| CG3609-PA | 335 | CG3609-PA | 1..335 | 1..335 | 1712 | 100 | Plus |
| CG3597-PA | 335 | CG3597-PA | 7..332 | 5..329 | 670 | 42 | Plus |
| CG3597-PB | 337 | CG3597-PB | 7..334 | 5..329 | 658 | 41.8 | Plus |
