BS29918.complete Sequence
968 bp assembled on 2012-05-24
GenBank Submission: KX805862
> BS29918.complete
GAAGTTATCAGTCGACATGGATAACAAGTCAGCCGTATCTGCTCTACAGG
AGTTTTGTGCCCGGACACAGATTAATCTACCAACATACAGTTTTATTCCC
GGCGAAGACGGAGGGTACGTCTGTAAAGTTGAACTATTGGAGATAGAGGC
CCTTGGAAATGGGCGTTCGAAGCGTGATGCCAAACACCTGGCTGCCAGCA
ATATCTTGCGTAAAATCCAACTGCTGCCCGGCATACACGGCTTGATGAAG
GATTCGACTGTGGGTGATCTGGATGAGGAACTGACTAACCTCAACCGGGA
CATGGTGAAGGAGCTGCGTGACTACTGCGTCCGCCGCGAGATGCCACTGC
CCTGCATTGAGGTAGTGCAGCAAAGCGGCACCCCGAGCGCCCCGGAATTC
GTGGCCTGTTGCTCCGTGGCCTCCATAGTACGCTACGGAAAGTCGGACAA
AAAGAAGGATGCCCGTCAGCGAGCGGCCATTGAAATGCTGGCCTTAATCT
CCAGCAATTCGGACAATTTGCGTCCGGATCAAATGCAAGTAGCGAGCACA
AGCAAATTGAAAGTTGTTGATATGGAAGAATCTATGGAGGAATTGGAGGC
ATTGCGCAGAAAGAAATTTACCACCTACTGGGAGTTGAAGGAAGCCGGGA
GCGTAGACCATACAGGCATGCGGCTCTGCGACCGACACAACTACTTCAAG
AACTTCTATCCTACCCTGAAAAAGGAGGCCATTGAGGCCATCAATTCAGA
TGAATACGAGAGCTCCAAGGATAAGGCTATGGACGTAATGAGCTCTTTAA
AGATAACACCCAAAATCAGTGAAGTGGAATCTTCATCGTTGGTTCCCTTG
CTTAGCGTCGAGCTTAATTGTGCATTCGACGTGGTCCTTATGGCAAAGGA
GACCGATATCTACGACCATATAATAGACTATTTTCGCACCATGTTGATTT
AAAAGCTTTCTAGACCAT
BS29918.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:26:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| r2d2-RC | 936 | CG7138-PC | 1..936 | 17..952 | 4680 | 100 | Plus |
| r2d2-RB | 936 | CG7138-PB | 1..936 | 17..952 | 4680 | 100 | Plus |
| r2d2-RA | 936 | CG7138-PA | 1..936 | 17..952 | 4680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:26:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| r2d2-RC | 1356 | CG7138-RC | 356..1292 | 16..952 | 4685 | 100 | Plus |
| r2d2-RB | 1121 | CG7138-RB | 121..1057 | 16..952 | 4685 | 100 | Plus |
| r2d2-RA | 1786 | CG7138-RA | 263..1199 | 16..952 | 4685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7800720..7801511 | 161..952 | 3960 | 100 | Plus |
| 2L | 23513712 | 2L | 7800502..7800648 | 16..162 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:26:33 has no hits.
BS29918.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:47 Download gff for
BS29918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| r2d2-RB | 337..1270 | 17..950 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:10 Download gff for
BS29918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| r2d2-RA | 264..1197 | 17..950 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:43:20 Download gff for
BS29918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| r2d2-RA | 264..1197 | 17..950 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:43:20 Download gff for
BS29918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7800503..7800647 | 17..161 | 100 | -> | Plus |
| 2L | 7800721..7801509 | 162..950 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:10 Download gff for
BS29918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7800503..7800647 | 17..161 | 100 | -> | Plus |
| arm_2L | 7800721..7801509 | 162..950 | 100 | | Plus |
BS29918.pep Sequence
Translation from 16 to 951
> BS29918.pep
MDNKSAVSALQEFCARTQINLPTYSFIPGEDGGYVCKVELLEIEALGNGR
SKRDAKHLAASNILRKIQLLPGIHGLMKDSTVGDLDEELTNLNRDMVKEL
RDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDAR
QRAAIEMLALISSNSDNLRPDQMQVASTSKLKVVDMEESMEELEALRRKK
FTTYWELKEAGSVDHTGMRLCDRHNYFKNFYPTLKKEAIEAINSDEYESS
KDKAMDVMSSLKITPKISEVESSSLVPLLSVELNCAFDVVLMAKETDIYD
HIIDYFRTMLI*
BS29918.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| r2d2-PC | 311 | CG7138-PC | 1..311 | 1..311 | 1584 | 100 | Plus |
| r2d2-PB | 311 | CG7138-PB | 1..311 | 1..311 | 1584 | 100 | Plus |
| r2d2-PA | 311 | CG7138-PA | 1..311 | 1..311 | 1584 | 100 | Plus |
