Clone BS29921 Report

Search the DGRC for BS29921

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:299
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptMtap-RA
Protein status:BS29921.pep: full length peptide match
Sequenced Size:902

Clone Sequence Records

BS29921.complete Sequence

902 bp assembled on 2012-05-24

GenBank Submission: KX800980

> BS29921.complete
GAAGTTATCAGTCGACATGATTACGATTAAATGTAAAGACACCAATCTGG
ACCCGCTTCCGGTCAAGATTGGTATTATTGGCGGTTCGGGGCTTGACGAC
CCAGATATCCTGGAACAGCGGCAGGAACGTGTGGTGGAGACGCCCTACGG
AGAACCGTCTGATGCATTGATTGAAGGCGAGATCAATGGAGTACAGTGCG
TACTCCTGGCGCGTCATGGACGCAAGCACGACATCATGCCCTCCAATGTT
AACTACCGGGCCAACATCTGGGCTCTACGCGATGTGGGCTGCACCCACTT
AATTGTCTCCACGGCATGTGGATCGTTGCGCGAGGAAATCAAGCCGGGCA
ACCTGGTTGTTCCACACGACTTTATCGACAGGACTACTAAACGCCTTCAG
ACCTTCTACGATGGCAAGGCACAAAGTCCACGTGGTGTTTGCCACCTGCC
CATGTTTCCGGCATTCAGCGAACGCACCCGCAACATTCTGCTTCAGGCGG
CCAAGGAGCTGGAGATTCCCGCCCACGATAAGGCCACCATTGTGACTATT
GAGGGTCCGCGCTTCTCCTCTCGCTCGGAGAGCCACATGTTCCGTCAGTG
GGGCGGGGACCTCATAAACATGACCACGTGTCCAGAAGTGGTGCTAGCCA
AGGAGGCTGGCCTACTTTACGGGTCGGTGGCCATTGCCACGGACTACGAC
TGCTGGCGCATGGGTTGCGAGGGTGTCAACGTGCAGGATGTCCTCCGTAC
TTTTGCCGAGAACGTAATTAAGGTGAAGAAGATTCTGGTCAACGCTGTTG
GTCGAATTGCCAAGGAGGACTGGTCGGAGGACATACTAAATGCCAAGCAA
TGCGTTTGCAACAACACAATGTCTGGAGCCATGTGAAAGCTTTCTAGACC
AT

BS29921.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
Mtap-RC 870 CG4802-PC 1..870 17..886 4350 100 Plus
Mtap-RB 1083 CG4802-PB 1..870 17..886 4350 100 Plus
Mtap-RA 870 CG4802-PA 1..870 17..886 4350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
Mtap-RC 1392 CG4802-RC 248..1118 16..886 4355 100 Plus
Mtap-RB 1234 CG4802-RB 90..960 16..886 4355 100 Plus
Mtap-RA 1234 CG4802-RA 90..960 16..886 4355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17428162..17428943 66..847 3910 100 Plus
2R 25286936 2R 17428042..17428093 16..67 260 100 Plus
2R 25286936 2R 17429001..17429041 846..886 205 100 Plus
Blast to na_te.dros performed on 2014-11-28 11:26:42 has no hits.

BS29921.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:48 Download gff for BS29921.complete
Subject Subject Range Query Range Percent Splice Strand
CG4802-RA 324..1192 17..885 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:14 Download gff for BS29921.complete
Subject Subject Range Query Range Percent Splice Strand
CG4802-RA 91..959 17..885 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:43:23 Download gff for BS29921.complete
Subject Subject Range Query Range Percent Splice Strand
Mtap-RA 91..959 17..885 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:43:23 Download gff for BS29921.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17428043..17428093 17..67 100 -> Plus
2R 17428164..17428943 68..847 100 -> Plus
2R 17429003..17429040 848..885 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:14 Download gff for BS29921.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13315669..13316448 68..847 100 -> Plus
arm_2R 13316508..13316545 848..885 100   Plus
arm_2R 13315548..13315598 17..67 100 -> Plus

BS29921.pep Sequence

Translation from 16 to 885

> BS29921.pep
MITIKCKDTNLDPLPVKIGIIGGSGLDDPDILEQRQERVVETPYGEPSDA
LIEGEINGVQCVLLARHGRKHDIMPSNVNYRANIWALRDVGCTHLIVSTA
CGSLREEIKPGNLVVPHDFIDRTTKRLQTFYDGKAQSPRGVCHLPMFPAF
SERTRNILLQAAKELEIPAHDKATIVTIEGPRFSSRSESHMFRQWGGDLI
NMTTCPEVVLAKEAGLLYGSVAIATDYDCWRMGCEGVNVQDVLRTFAENV
IKVKKILVNAVGRIAKEDWSEDILNAKQCVCNNTMSGAM*

BS29921.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
Mtap-PC 289 CG4802-PC 1..289 1..289 1526 100 Plus
Mtap-PA 289 CG4802-PA 1..289 1..289 1526 100 Plus
Mtap-PB 360 CG4802-PB 1..289 1..289 1526 100 Plus
CG31115-PB 290 CG31115-PB 14..285 12..283 792 51.5 Plus