BS29928.complete Sequence
1004 bp assembled on 2012-05-24
GenBank Submission: KX804040
> BS29928.complete
GAAGTTATCAGTCGACATGACCGACGAGTGCGTAACCAGAAACTACGGAG
TAGGCATTCGCAGCCCAAATGGATCGGAAAATCGGGGCAGCTTTATAATG
GCTGATAATACCGATGCCAAGGGCTGTACGCCGGAGTCTCTTGTTGTTGG
TGGTGCAACTGCAGCGAGCCCCTTGCCGGCCAACAAGTTTGTGGCTCGAA
TGCCCGTGGAACGATATGCAAGCGAATACAACATGAGTCACAAGCACCGC
GGAGTTGCGCTGATCTTCAACCACGAATTCTTCGACATACCCTCGCTGAA
GAGCCGCACCGGAACAAATGTCGATGCCCAAGAGCTGAAAAAGGCCTTTG
AAAACCTGGGATTCGCGGTGTCCGTGCACAAGGACTGCAAGTTGAGGGAC
ATCCTGAAGCACGTGGGGAAGGCCGCCGAGTTGGACCACACGGACAACGA
CTGCCTTGCGGTGGCCATACTCTCGCACGGGGAGCACGGCTACCTGTACG
CCAAGGATACGCAGTACAAGCTGGACAACATCTGGCACTACTTCACTGCC
ACCTTCTGCCCCTCGCTGGCGGGCAAGCCGAAGCTGTTCTTCATCCAAGC
CTGCCAGGGCGATCGCTTGGACGGAGGCATCACTCTGGAGAAGGGCGTTA
CCGAGACGGACGGGGAGTCCTCGACGAGCTACAAGATACCCATACACGCC
GACTTTCTCTTCTCCTACTCGACCATTCCGGGCTACTTCTCCTGGCGCAA
CATCAACAATGGCTCCTGGTACATGCAATCGCTGATCCGCGAGCTGAACG
CCAATGGCAAAAAGTACGACCTGCTCACCCTGCTTACATTCGTTAACCAG
CGCGTAGCCCTAGACTTTGAGTCGAACGTGCCCGCCACACCGATGATGGA
TCGCCAGAAGCAAATACCGTGCCTCACCTCCATGCTGACGCGCATACTGC
GCTTCGGCGACAAGCCGAACGGCAATAAGGCTGGCTAGAAGCTTTCTAGA
CCAT
BS29928.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:27:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dcp-1-RA | 972 | CG5370-PA | 1..972 | 17..988 | 4860 | 100 | Plus |
| Drice-RA | 1020 | CG7788-PA | 489..994 | 460..965 | 595 | 74.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:27:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dcp-1-RA | 1749 | CG5370-RA | 411..1382 | 17..988 | 4860 | 100 | Plus |
| Drice-RA | 1927 | CG7788-RA | 729..1234 | 460..965 | 595 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:27:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23552299..23552864 | 167..732 | 2830 | 100 | Plus |
| 2R | 25286936 | 2R | 23552923..23553180 | 731..988 | 1290 | 100 | Plus |
| 2R | 25286936 | 2R | 23551723..23551874 | 17..168 | 760 | 100 | Plus |
| 3R | 32079331 | 3R | 29800386..29800891 | 460..965 | 595 | 74.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:27:01 has no hits.
BS29928.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:51 Download gff for
BS29928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp-1-RA | 409..1380 | 17..988 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:25 Download gff for
BS29928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp-1-RA | 411..1382 | 17..988 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:43:31 Download gff for
BS29928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp-1-RA | 411..1382 | 17..988 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:43:31 Download gff for
BS29928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23551723..23551874 | 17..168 | 100 | -> | Plus |
| 2R | 23552301..23552863 | 169..731 | 100 | -> | Plus |
| 2R | 23552924..23553180 | 732..988 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:25 Download gff for
BS29928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19439246..19439397 | 17..168 | 100 | -> | Plus |
| arm_2R | 19440447..19440703 | 732..988 | 100 | | Plus |
| arm_2R | 19439824..19440386 | 169..731 | 100 | -> | Plus |
BS29928.pep Sequence
Translation from 16 to 987
> BS29928.pep
MTDECVTRNYGVGIRSPNGSENRGSFIMADNTDAKGCTPESLVVGGATAA
SPLPANKFVARMPVERYASEYNMSHKHRGVALIFNHEFFDIPSLKSRTGT
NVDAQELKKAFENLGFAVSVHKDCKLRDILKHVGKAAELDHTDNDCLAVA
ILSHGEHGYLYAKDTQYKLDNIWHYFTATFCPSLAGKPKLFFIQACQGDR
LDGGITLEKGVTETDGESSTSYKIPIHADFLFSYSTIPGYFSWRNINNGS
WYMQSLIRELNANGKKYDLLTLLTFVNQRVALDFESNVPATPMMDRQKQI
PCLTSMLTRILRFGDKPNGNKAG*
BS29928.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dcp-1-PA | 323 | CG5370-PA | 1..323 | 1..323 | 1718 | 100 | Plus |
| Drice-PA | 339 | CG7788-PA | 72..331 | 57..316 | 980 | 67.7 | Plus |
| Decay-PA | 308 | CG14902-PA | 22..306 | 47..317 | 410 | 34 | Plus |
| Strica-PB | 527 | CG7863-PB | 317..525 | 83..315 | 248 | 34.6 | Plus |
| Strica-PA | 527 | CG7863-PA | 317..525 | 83..315 | 248 | 34.6 | Plus |
