BS29929.complete Sequence
908 bp assembled on 2012-05-24
GenBank Submission: KX802190
> BS29929.complete
GAAGTTATCAGTCGACATGAGCAATCACAGATACCATCAGGGGGGCAACT
ACATGCACCCGCGGATCTCCACCTATCCGCACCACTTCAGCTACGTTTCC
TCTTGCGTCAAGTACATGATCTTCCTGCTAAACTTCCTGTTCTGGCTCTT
CGGCGGCCTGCTCCTGGCCATCGGCGTGTACGCCTTCATGGACAAACTGA
TGGACGGCAATGGCTGGCTGCGCTTGGACACCATCTACGATGTGATCTTC
AACATCTCCCTGGTGATGATCATCGCCGGAGTCATCGTCTTCACGGTCAG
CTTCGCCGGCTGTTTGGGTGCGCTGCGCGAGAACACCTGGCTGCTAAAGC
TGTACTCCATGTGCCTGCTTCTCTTCTTCATACTGGAGATGTCGCTGGCC
ATCATCTGCTTCGTTTTCCCGCAGTACATGAACTCGTTCCTCGAGTACCA
GTTCACGGACAAAATCATCCACTCGTACCGTGACGACTCCGACTTGCAAA
ACTTCATCGACTTTGCCCAGCAGGAGTTTAACTGCTGCGGCCTGAGCAAC
GCCGGCTACCAGGATTGGAGCAAGAACGAGTACTTCAACTGCTCATCGCC
GTCGGTGGAGAGATGTGGAGTGCCCTACAGCTGCTGTATTAATGCCACCG
ATATCAGCTCCGGCCTAGTGAACATCATGTGTGGCTATGGCGTGCAGGTG
CGTTCAGTGGCCGCCGCCAGCAAGCGCATCTGGACCAGCGGCTGCATCGA
GATCGTGCGAGTATGGGTCGAGAGGAATCTGTATGTGATTGCCGGCGTTG
CCCTGGGCATAGCCTTGCTGCAGTTGTTCGTCATCTATTTGGCCAAGACC
CTGGAGGGACAGATCGACCTGCAGAAGTCGCGCTGGTCGTGAAAGCTTTC
TAGACCAT
BS29929.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:27:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp86D-RB | 876 | CG4591-PB | 1..876 | 17..892 | 4365 | 99.9 | Plus |
| Tsp86D-RC | 951 | CG4591-PC | 1..876 | 17..892 | 4365 | 99.9 | Plus |
| Tsp86D-RA | 876 | CG4591-PA | 1..876 | 17..892 | 4365 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:27:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp86D-RB | 1401 | CG4591-RB | 325..1201 | 16..892 | 4370 | 99.9 | Plus |
| Tsp86D-RC | 1791 | CG4591-RC | 325..1201 | 16..892 | 4370 | 99.9 | Plus |
| Tsp86D-RA | 1791 | CG4591-RA | 325..1201 | 16..892 | 4370 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:27:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10869032..10869586 | 16..570 | 2760 | 99.8 | Plus |
| 3R | 32079331 | 3R | 10869643..10869965 | 570..892 | 1615 | 100 | Plus |
| X | 23542271 | X | 2618445..2618761 | 886..570 | 610 | 79.5 | Minus |
| X | 23542271 | X | 2619123..2619439 | 391..75 | 595 | 79.2 | Minus |
| X | 23542271 | X | 2618868..2619040 | 570..398 | 460 | 84.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:27:04 has no hits.
BS29929.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:52 Download gff for
BS29929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp86D-RA | 322..1196 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:27 Download gff for
BS29929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp86D-RA | 326..1200 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:43:33 Download gff for
BS29929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp86D-RA | 326..1200 | 17..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:43:33 Download gff for
BS29929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10869033..10869585 | 17..569 | 99 | -> | Plus |
| 3R | 10869643..10869964 | 570..891 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:27 Download gff for
BS29929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6694755..6695307 | 17..569 | 99 | -> | Plus |
| arm_3R | 6695365..6695686 | 570..891 | 100 | | Plus |
BS29929.pep Sequence
Translation from 16 to 891
> BS29929.pep
MSNHRYHQGGNYMHPRISTYPHHFSYVSSCVKYMIFLLNFLFWLFGGLLL
AIGVYAFMDKLMDGNGWLRLDTIYDVIFNISLVMIIAGVIVFTVSFAGCL
GALRENTWLLKLYSMCLLLFFILEMSLAIICFVFPQYMNSFLEYQFTDKI
IHSYRDDSDLQNFIDFAQQEFNCCGLSNAGYQDWSKNEYFNCSSPSVERC
GVPYSCCINATDISSGLVNIMCGYGVQVRSVAAASKRIWTSGCIEIVRVW
VERNLYVIAGVALGIALLQLFVIYLAKTLEGQIDLQKSRWS*
BS29929.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:38:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp86D-PB | 291 | CG4591-PB | 1..291 | 1..291 | 1554 | 100 | Plus |
| Tsp86D-PA | 291 | CG4591-PA | 1..291 | 1..291 | 1554 | 100 | Plus |
| Tsp86D-PC | 316 | CG4591-PC | 1..291 | 1..291 | 1554 | 100 | Plus |
| Tsp3A-PB | 304 | CG10742-PB | 1..302 | 1..290 | 1204 | 75.2 | Plus |
| Tsp3A-PA | 304 | CG10742-PA | 1..302 | 1..290 | 1204 | 75.2 | Plus |
