BS29931.complete Sequence
1568 bp assembled on 2012-05-24
GenBank Submission: KX800763
> BS29931.complete
GAAGTTATCAGTCGACATGCGAATAGTTATTGGATCGTTCACCGCATTTC
TTTTGCTGTTATTGCAAAACTCAAATGCCGAAATTCCCGGTTGCGACTTC
TTCGACACCGTAGATATTTCAAAAGCGCCAAGATTCTCGAACGGATCGTA
CCTCTACGAAGGCTTGCTGATCCCCGCCCATTTGACAGCTGAATATGACT
ACAAGCTCCTGGCCGACGATTCGAAGGAGAAGGTGGCGAGCCACGTACGA
GGATGTGCCTGCCACCTCAGGCCATGCATTCGGTTTTGTTGCCCCCAGTA
CCAAAAGATGCAAAAGAGCAAGTGCTACGGCGACATGTCGGAGGACGAGC
TGAACAAGCACGATCCCTTCGTGAACGTGACGCTCAGCGACGGGTCGGTG
GTCAGGAGACACTTCAAGGAGGATCTGATCGTGCAGTCGGATCTGGCCAA
GCCCGGATGTCCCCGGATGTACTTTCTGAATCACGAACTGCCGGGCAATG
AATTCACTCTGTTTGAGAACGGCTCTCTTCTGCGTCACTGGGACAAAGTG
GAACTGAGCAAGCGGGAGTACTGCGTCCAGCATCTTTCATTTAAGGATGA
TAGTATCCGAATTGCACCCCACTTCTGTCCACTTTCGTCTGAGCACTCCA
GAACGTGGAAGACCGTTGCGATAGTGATATCCTTGATATGCATAATCCTA
ACGATCAGCGTGTACCTCTATGTTGAGAAGCTTCGCAACCTGCACGGAAA
GTGTTTCATCTGCTACTTGGCCTCCTTGTTCCTGGGATATTTCTTCCTGG
TCCTCAACGTGTGGAAATACTCCTCCGGCTTCTGCGTTACAGCAGGGTTC
CTGGGCTACTTCTCCGTCATCGCCGCGTTCTTTTGGCTTTCTGTCATCAG
TCTTACCCTCTGGAATTCATTTAGCGGCAACTCCAGCTGGTTGAACCGTT
TCTTGCCACAGAATCGGTTCCTTTCTTACAATTTATACGCCTGGGGCATG
GCGCTGCTCCTGACTGCAATCACCTATATAGCTGACCAGGTGGTTAAGAA
CGAGAAGTTGAGACCCCGCGTGGGCGTCGGCAAAAATTGTTGGATCTACA
CTGGGGATATGACTGTCATGATCTACTTCTATGGCCCGATGCTACTGATA
ATTGTTTTCAACATAACAATGTTTGTCCTGACGGCTTTTCGTATAATGAA
AGTGAAGAAGGAAGCACAAAACTTTACTCAACAGCAAAAAACAACCAATA
GGCTCAATTCGGACAAGCAGACTTACGCCCTATTCCTGCGACTCTTTATC
ATCATGGGCTTGTCCTGGAGCTTGGAAATAATCTCGTTTTTGTTGAGCAA
AAATCAGGCTTGGGCCAAGGCTTTTATGGTGGCTGATTACTTCAATTGGT
CACAGGGCACCGTCATATTTCTGCTATTTGTTCTGAGGCCCAGCACACTG
AAGCTACTGAAGGAACGGATTAAGGGTGGGAGGGATGAAGCCGGCGCCAG
CGATGAACATATCTCACTTCAGAATACGAAAATTGACCCCAGTGTTTTTT
AAAAGCTTTCTAGACCAT
BS29931.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl3-RC | 1536 | CG6530-PC | 1..1536 | 17..1552 | 7680 | 100 | Plus |
| mthl3-RB | 1536 | CG6530-PB | 1..1536 | 17..1552 | 7680 | 100 | Plus |
| mthl3-RA | 1536 | CG6530-PA | 1..1536 | 17..1552 | 7680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:27:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl3-RC | 2047 | CG6530-RC | 212..1747 | 17..1552 | 7680 | 100 | Plus |
| mthl3-RB | 2296 | CG6530-RB | 461..1996 | 17..1552 | 7680 | 100 | Plus |
| mthl3-RA | 1985 | CG6530-RA | 150..1685 | 17..1552 | 7680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:27:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17450529..17451029 | 517..17 | 2505 | 100 | Minus |
| 2R | 25286936 | 2R | 17446737..17447210 | 517..44 | 2235 | 98.1 | Minus |
| 2R | 25286936 | 2R | 17449769..17450026 | 1100..843 | 1290 | 100 | Minus |
| 2R | 25286936 | 2R | 17449264..17449459 | 1468..1273 | 980 | 100 | Minus |
| 2R | 25286936 | 2R | 17450085..17450263 | 846..668 | 895 | 100 | Minus |
| 2R | 25286936 | 2R | 17449537..17449708 | 1272..1101 | 860 | 100 | Minus |
| 2R | 25286936 | 2R | 17446293..17446471 | 846..668 | 835 | 97.8 | Minus |
| 2R | 25286936 | 2R | 17446527..17446679 | 668..516 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 17450319..17450471 | 668..516 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 17445977..17446234 | 1100..843 | 645 | 83.3 | Minus |
| 2R | 25286936 | 2R | 17449118..17449203 | 1552..1467 | 430 | 100 | Minus |
| 2R | 25286936 | 2R | 17445512..17445676 | 1445..1281 | 345 | 80.6 | Minus |
| 2R | 25286936 | 2R | 17445841..17445919 | 1179..1101 | 290 | 91.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:27:11 has no hits.
BS29931.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:53 Download gff for
BS29931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl3-RA | 96..1629 | 17..1550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:30 Download gff for
BS29931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl3-RA | 150..1683 | 17..1550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:43:35 Download gff for
BS29931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl3-RA | 150..1683 | 17..1550 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:43:35 Download gff for
BS29931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17449769..17450023 | 846..1100 | 100 | <- | Minus |
| 2R | 17450086..17450262 | 669..845 | 100 | <- | Minus |
| 2R | 17450319..17450469 | 518..668 | 100 | <- | Minus |
| 2R | 17449120..17449202 | 1468..1550 | 100 | <- | Minus |
| 2R | 17449265..17449459 | 1273..1467 | 100 | <- | Minus |
| 2R | 17449537..17449708 | 1101..1272 | 100 | <- | Minus |
| 2R | 17450529..17451029 | 17..517 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:30 Download gff for
BS29931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13337042..13337213 | 1101..1272 | 100 | <- | Minus |
| arm_2R | 13336770..13336964 | 1273..1467 | 100 | <- | Minus |
| arm_2R | 13336625..13336707 | 1468..1550 | 100 | <- | Minus |
| arm_2R | 13337274..13337528 | 846..1100 | 100 | <- | Minus |
| arm_2R | 13337591..13337767 | 669..845 | 100 | <- | Minus |
| arm_2R | 13337824..13337974 | 518..668 | 100 | <- | Minus |
| arm_2R | 13338034..13338534 | 17..517 | 100 | | Minus |
BS29931.pep Sequence
Translation from 16 to 1551
> BS29931.pep
MRIVIGSFTAFLLLLLQNSNAEIPGCDFFDTVDISKAPRFSNGSYLYEGL
LIPAHLTAEYDYKLLADDSKEKVASHVRGCACHLRPCIRFCCPQYQKMQK
SKCYGDMSEDELNKHDPFVNVTLSDGSVVRRHFKEDLIVQSDLAKPGCPR
MYFLNHELPGNEFTLFENGSLLRHWDKVELSKREYCVQHLSFKDDSIRIA
PHFCPLSSEHSRTWKTVAIVISLICIILTISVYLYVEKLRNLHGKCFICY
LASLFLGYFFLVLNVWKYSSGFCVTAGFLGYFSVIAAFFWLSVISLTLWN
SFSGNSSWLNRFLPQNRFLSYNLYAWGMALLLTAITYIADQVVKNEKLRP
RVGVGKNCWIYTGDMTVMIYFYGPMLLIIVFNITMFVLTAFRIMKVKKEA
QNFTQQQKTTNRLNSDKQTYALFLRLFIIMGLSWSLEIISFLLSKNQAWA
KAFMVADYFNWSQGTVIFLLFVLRPSTLKLLKERIKGGRDEAGASDEHIS
LQNTKIDPSVF*
BS29931.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:38:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl3-PC | 511 | CG6530-PC | 1..511 | 1..511 | 2703 | 100 | Plus |
| mthl3-PB | 511 | CG6530-PB | 1..511 | 1..511 | 2703 | 100 | Plus |
| mthl3-PA | 511 | CG6530-PA | 1..511 | 1..511 | 2703 | 100 | Plus |
| mthl4-PB | 517 | CG6536-PB | 1..488 | 1..495 | 2191 | 83.4 | Plus |
| mth-PE | 514 | CG6936-PE | 10..507 | 7..504 | 1584 | 59.1 | Plus |
