BS29932.complete Sequence
1583 bp assembled on 2012-05-24
GenBank Submission: KX802836
> BS29932.complete
GAAGTTATCAGTCGACATGTCATCGGATCGGTTTCACAAAGCCGCCAAAG
ATGGGCTGTTGGATGTGTTGGCAGCAGCCACACGGAAGGATACGAATGCC
AAGGACAGTGATTCCATGACGCCGGTCATGTGGGCTGCCTTCGAGGGGCG
TCTGGATGCACTGCGTCTGCTGTGCGGAAGGGGTGGTGACCCTGACAAAT
GCGATCAGTTCGGAAACACAGCCTTGCACTTGGCCTCCGCCAAGGGTCAT
TTGCATTGCGTCGACTTCTTGGTGAAATTCGGAGTAAACATCTATGCCTT
GGATATCGATAAGCACAGCGCCAAGGATCTGGCGGCTATTAATGGCAGGG
ACGAGATCCTGCGCTACTTGGATGTTGCCTTCACAAACTTTGAGGCCACT
GAAAAAAAAAAAAGCAAGGCCCTGAAAGAATTGGCCGAGAAAAACTGCGA
GAAACGTGTTAGGGAGTACATGAAGCGCCAGAATCAGCAGCAACAGCGCC
AGGATCCGGAGTATTCGGATCTAAGCGCACCCAGTGGCTCCAGCAAGACC
GGCAACATGCTGTCCACTCTGAAGCAGAAGATCTGGTCCAGCCAGGGCAA
TCTAAATAAGACACCAAGGGATACACCGCCTCCCACAAAGTTCAGCGATC
TGGTTGGGAACGGTAGCAGCAGCAGCGGTGGCTCCACAATAGCCAGTCGA
GCGGGAACGGTGCAAAAGAGACCGTCGCAGCTCCAAAAGCAGCACAGCAG
CACATGTCCACACTCGAAGATATCCAGCGACACAGACGGTGGCTTCAAGG
TGCGCGAGGTGGAGCCAGATGGAAAGCGAACCATTACATCGCTTACGGGT
CTGCAGAGAGACTCCGAGGTGCTGTATGTGGGCACCTTTAGTTCCAACGA
GGACAGTGTCGGCAAGCGCGGCAAGATCAGCGATGTTTTTGAGTGCATGG
AGGCCGATGAGTTGGACCACAGCGATAACCGCAGTGGCTATAGCTCTACT
TTAGCGCGTTCCTTCTCCCAACCGGATATTCTGGGGGATGGTCAGTTGAC
CCAGGAACTAAGCGAGGAAGTGACCCTCCAGAGACCCGTTGGACTCTTCG
ATAGACCCACCATGCTGGGCAGCATTGCCTTTCGTCGATCCGTAACTGCT
GCTTTAAGTCAGCTTCAACTGCACACGGACACCAGTTCCACTTCCACGAT
GCGGAATGCGGGCAGCAATCCTCCAAAGACACGAAATGGCGGAGGAAAGG
GTCGTTTATATTTGAACCTTTCGGATGATACGGACTCGGAGGGCGGCGGT
CATGACATCTATAGCGATGATGACGACGACGACCGAGATGCCGGAGGAAG
TGCCTTGCAGCGATTCCTGGCCGTTTGGGCCCTGGAAGAATACCTGCCAG
TATTTCAGAAGCAAGAGATCGACTTGGAGACTCTGATGCTGCTCACAGAA
TCGGACCTTAAGTCACTTGGCTTGCCACTGGGGCCATTCCGTAAACTCAC
CTTCGCCATTCAGGAGAGACGTAACGCCCTGGCCAATCCCGGACCCCTGG
TAGACAGTCGACTGTAGAAGCTTTCTAGACCAT
BS29932.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:27:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sans-RB | 1551 | CG13320-PB | 1..1551 | 17..1567 | 7755 | 100 | Plus |
| Sans-RA | 1551 | CG13320-PA | 1..1551 | 17..1567 | 7755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:27:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sans-RB | 1898 | CG13320-RB | 253..1803 | 17..1567 | 7755 | 100 | Plus |
| Sans-RA | 1905 | CG13320-RA | 260..1810 | 17..1567 | 7755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:27:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12939087..12940082 | 406..1401 | 4980 | 100 | Plus |
| 2R | 25286936 | 2R | 12938774..12938996 | 183..405 | 1115 | 100 | Plus |
| 2R | 25286936 | 2R | 12940152..12940317 | 1402..1567 | 830 | 100 | Plus |
| 2R | 25286936 | 2R | 12938568..12938711 | 40..183 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:27:14 has no hits.
BS29932.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:54 Download gff for
BS29932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sans-RB | 249..1799 | 17..1567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:33 Download gff for
BS29932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sans-RA | 260..1810 | 17..1567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:43:37 Download gff for
BS29932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sans-RA | 260..1810 | 17..1567 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:43:37 Download gff for
BS29932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12938453..12938475 | 17..39 | 100 | -> | Plus |
| 2R | 12938568..12938711 | 40..183 | 100 | -> | Plus |
| 2R | 12938775..12938996 | 184..405 | 100 | -> | Plus |
| 2R | 12939087..12940082 | 406..1401 | 100 | -> | Plus |
| 2R | 12940152..12940317 | 1402..1567 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:33 Download gff for
BS29932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8826073..8826216 | 40..183 | 100 | -> | Plus |
| arm_2R | 8826280..8826501 | 184..405 | 100 | -> | Plus |
| arm_2R | 8825958..8825980 | 17..39 | 100 | -> | Plus |
| arm_2R | 8826592..8827587 | 406..1401 | 100 | -> | Plus |
| arm_2R | 8827657..8827822 | 1402..1567 | 100 | | Plus |
BS29932.pep Sequence
Translation from 16 to 1566
> BS29932.pep
MSSDRFHKAAKDGLLDVLAAATRKDTNAKDSDSMTPVMWAAFEGRLDALR
LLCGRGGDPDKCDQFGNTALHLASAKGHLHCVDFLVKFGVNIYALDIDKH
SAKDLAAINGRDEILRYLDVAFTNFEATEKKKSKALKELAEKNCEKRVRE
YMKRQNQQQQRQDPEYSDLSAPSGSSKTGNMLSTLKQKIWSSQGNLNKTP
RDTPPPTKFSDLVGNGSSSSGGSTIASRAGTVQKRPSQLQKQHSSTCPHS
KISSDTDGGFKVREVEPDGKRTITSLTGLQRDSEVLYVGTFSSNEDSVGK
RGKISDVFECMEADELDHSDNRSGYSSTLARSFSQPDILGDGQLTQELSE
EVTLQRPVGLFDRPTMLGSIAFRRSVTAALSQLQLHTDTSSTSTMRNAGS
NPPKTRNGGGKGRLYLNLSDDTDSEGGGHDIYSDDDDDDRDAGGSALQRF
LAVWALEEYLPVFQKQEIDLETLMLLTESDLKSLGLPLGPFRKLTFAIQE
RRNALANPGPLVDSRL*
BS29932.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sans-PB | 516 | CG13320-PB | 1..516 | 1..516 | 2656 | 100 | Plus |
| Sans-PA | 516 | CG13320-PA | 1..516 | 1..516 | 2656 | 100 | Plus |
