BS29934.complete Sequence
1217 bp assembled on 2012-05-24
GenBank Submission: KX801517
> BS29934.complete
GAAGTTATCAGTCGACATGGGCGAACAACCGATTTTCACCTGCCAGGCGC
ACGTCTTCCACATCGATCCGAAGACGAAGCGCACCTGGATCACGGCCAGC
ATGAAGGCGGTCAACGTTAGCTTCTTCTACGACAGCTCGCGAAATCTGTA
CCGCATCATCAGTGTCGAGGGCACCAAGGCGGTGATAAACTCGACGATCA
CACCCAACATGACCTTCACCCAGACCTCCCAGAAGTTCGGCCAGTGGAGC
GATGTGCGGGCAAACACGGTGTACGGCTTGGGATTTGCCTCAGAGGCGGA
ATTGACCAAGTTCGTAGAGAAGTTCCAGGAGGTCAAGGAGGCCACCAAGA
ATGCCATGAAATCGGCCAACGGATCGAATGCCGTCACGCCCACCACCTCG
GCGAACACGTCGCCCATTTCCGGGAGAGCTGTGGGCTCCATGCAGAACGA
CAACACAGCCATCGATCCGCACACTGTGGAGCCGCCCAACATGAGCAACA
CGAATACCCAGAACGCCAATCCGGACAGTCCTTCCCACAAGCTTCTAAAT
ACCAGCGATGTCAAGGCGGACATCGGATCGGCCACGCCCTCGCCGCAGCC
CACTTCAGGGGTAACTGGTGGCGGTGGAGTGACCATCTCGTCTGGCGGAA
GCATTGTGGGCATGCACACGGGTCCTGGAGCCGGCGCCACCGCCGAGCAG
CAGCTTAAGTACGAGAACGAGCGTCTGAAAATGGCACTGGCACAAAGCTG
CGCCAATGCCAAGAAATGGGAAATCGAGCTGGCTACCTTGAAGAACAACA
ATATACGGCTGACTAGTGCTCTTCAGGAATCAACTGCCAATGTAGACGAA
TGGAAGCGCCAGCTGCACACTTACAAGGAGGAGAATATTCGCCTCAAACG
AGATATGGAGCAGCTGTGCGTGGGCGGCGGGGTTGTGGCTGCAGCCGGAG
GAGGCGCCACAGAGGACGAACTGCGTCGTGAGGTGGCCACGCTCAAGGCG
CGGACAGAACAACTACAGAAGGAACTTATGCAACAGGAACTTGAGCTTAA
GTCGGCCAATATTAGCCTACGTGAAAAGTCCAATGACCAAACGCTTGCAA
AGTTGAGTGAGGTGAATGGTGTGTTTGCCAAGCATCTTTCGGAGTTGTAT
GGGGTGCAGAAGGATATGGAGAGTCTTATACAAATTGCCAAGTGCACTTG
AAAGCTTTCTAGACCAT
BS29934.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:26:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| homer-RE | 1596 | CG11324-PE | 1..1185 | 17..1201 | 5925 | 100 | Plus |
| homer-RD | 1185 | CG11324-PD | 1..1185 | 17..1201 | 5925 | 100 | Plus |
| homer-RA | 1185 | CG11324-PA | 1..1185 | 17..1201 | 5925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| homer-RE | 1921 | CG11324-RE | 163..1347 | 17..1201 | 5925 | 100 | Plus |
| homer-RD | 2923 | CG11324-RD | 163..1347 | 17..1201 | 5925 | 100 | Plus |
| homer-RA | 1921 | CG11324-RA | 163..1347 | 17..1201 | 5925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:26:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6721650..6722088 | 747..309 | 2195 | 100 | Minus |
| 2L | 23513712 | 2L | 6722142..6722431 | 310..21 | 1450 | 100 | Minus |
| 2L | 23513712 | 2L | 6721188..6721456 | 1093..825 | 1345 | 100 | Minus |
| 2L | 23513712 | 2L | 6721024..6721132 | 1201..1093 | 545 | 100 | Minus |
| 2L | 23513712 | 2L | 6721517..6721598 | 827..746 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:26:46 has no hits.
BS29934.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:49 Download gff for
BS29934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| homer-RA | 159..1342 | 17..1200 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:17 Download gff for
BS29934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| homer-RA | 163..1346 | 17..1200 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:43:24 Download gff for
BS29934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| homer-RA | 163..1346 | 17..1200 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:43:24 Download gff for
BS29934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6721188..6721454 | 827..1093 | 100 | <- | Minus |
| 2L | 6721518..6721596 | 748..826 | 100 | <- | Minus |
| 2L | 6721025..6721131 | 1094..1200 | 100 | <- | Minus |
| 2L | 6721650..6722086 | 311..747 | 100 | <- | Minus |
| 2L | 6722142..6722432 | 17..310 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:17 Download gff for
BS29934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6721188..6721454 | 827..1093 | 100 | <- | Minus |
| arm_2L | 6721518..6721596 | 748..826 | 100 | <- | Minus |
| arm_2L | 6721025..6721131 | 1094..1200 | 100 | <- | Minus |
| arm_2L | 6721650..6722086 | 311..747 | 100 | <- | Minus |
| arm_2L | 6722142..6722432 | 17..310 | 98 | | Minus |
BS29934.pep Sequence
Translation from 16 to 1200
> BS29934.pep
MGEQPIFTCQAHVFHIDPKTKRTWITASMKAVNVSFFYDSSRNLYRIISV
EGTKAVINSTITPNMTFTQTSQKFGQWSDVRANTVYGLGFASEAELTKFV
EKFQEVKEATKNAMKSANGSNAVTPTTSANTSPISGRAVGSMQNDNTAID
PHTVEPPNMSNTNTQNANPDSPSHKLLNTSDVKADIGSATPSPQPTSGVT
GGGGVTISSGGSIVGMHTGPGAGATAEQQLKYENERLKMALAQSCANAKK
WEIELATLKNNNIRLTSALQESTANVDEWKRQLHTYKEENIRLKRDMEQL
CVGGGVVAAAGGGATEDELRREVATLKARTEQLQKELMQQELELKSANIS
LREKSNDQTLAKLSEVNGVFAKHLSELYGVQKDMESLIQIAKCT*
BS29934.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:38:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| homer-PD | 394 | CG11324-PD | 1..394 | 1..394 | 2009 | 100 | Plus |
| homer-PA | 394 | CG11324-PA | 1..394 | 1..394 | 2009 | 100 | Plus |
| homer-PF | 397 | CG11324-PF | 4..397 | 1..394 | 2000 | 99.5 | Plus |
| homer-PG | 400 | CG11324-PG | 7..400 | 1..394 | 2000 | 99.5 | Plus |
| homer-PB | 397 | CG11324-PB | 6..397 | 3..394 | 1998 | 100 | Plus |
