BS29938.complete Sequence
1019 bp assembled on 2012-05-24
GenBank Submission: KX805690
> BS29938.complete
GAAGTTATCAGTCGACATGCAGACGATCCGTCGGTTGGAGACGGCCGCCG
GTAATCTGTACAAGGAGAAGATCATTCGCGGCTTCTGTCATCTGTATTCC
GGCCAGGAGGCATGCGCCGTTGGCATGAAGGCGGCGATGCGGGATGTGGA
CAACATCATCTCGGCGTACCGTGTCCACGGATGGACCTACCTGATGGGCG
TCTCACCCAGCGGCGTACTGGCTGAGCTCACCGGTGTCCAGGGTGGCTGT
GCCCGCGGCAAGGGTGGCTCCATGCACATGTACGCACCGAACTTCTACGG
AGGCAATGGCATCGTGGGTGCTCAAGTTCCTTTGGGTGCCGGCGTTGGCT
TGGCCTGCAAGTACAAGGGCAATGGCGGCATGTGCCTGGCCCTCTACGGT
GATGGTGCCGCCAATCAAGGACAGGTGTTCGAGGCTTACAACATGGCCTA
CCTGTGGAAACTGCCTGTGATCTTTGTCTGCGAGAACAACAACTACGGAA
TGGGCACCAGTTCTGAGCGTGCTTCCTGCAACACTGATTACTATACCCGC
GGCGACGCTCTGCCCGGAATCTGGGTGGACGGCATGGATGTGCTGGCCGT
GCGCAGCGCCACCGAGTTCGCCATCAACTATGTGAACACTCACGGACCTT
TGGTGATGGAGACGAACACGTACCGATACTCTGGACACTCCATGTCCGAT
CCGGGCACATCGTACCGCACACGCGAGGAGATCCAGGAGGTGCGCCAGAA
GCGTGATCCCATCACCTCCTTCAAGGAGCTGTGCATCGAGCTGGGTCTGA
TTACCACCGATGAAGTTAAGGCCATCGATCTGAAGGTACGCAAGGAGGTC
GACGAGGCCACCGCCTTCGCCAAGTCCGATGCCGAGCTGGGCGTGAGCCA
CCTCTGGACGGACGTGTACTCCAACAATCTGGAGCCCAAGCTGCGCGGCA
CCATCGCCTACGATATTGATCACATCCAGGAGCGCAAGGGCGTCAATCAC
TAAAAGCTTTCTAGACCAT
BS29938.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0334-RB | 987 | CG7010-PB | 1..987 | 17..1003 | 4935 | 100 | Plus |
| l(1)G0334-RD | 1200 | CG7010-PD | 214..1200 | 17..1003 | 4935 | 100 | Plus |
| l(1)G0334-RA | 1200 | CG7010-PA | 214..1200 | 17..1003 | 4935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:27:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0334-RB | 1992 | CG7010-RB | 653..1639 | 17..1003 | 4935 | 100 | Plus |
| l(1)G0334-RD | 1667 | CG7010-RD | 328..1314 | 17..1003 | 4935 | 100 | Plus |
| l(1)G0334-RA | 1760 | CG7010-RA | 421..1407 | 17..1003 | 4935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4703639..4704120 | 17..498 | 2410 | 100 | Plus |
| X | 23542271 | X | 4704194..4704518 | 497..821 | 1625 | 100 | Plus |
| X | 23542271 | X | 4704586..4704770 | 819..1003 | 925 | 100 | Plus |
| X | 23542271 | X | 4706459..4706790 | 387..718 | 265 | 72 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:27:21 has no hits.
BS29938.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:55 Download gff for
BS29938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0334-RD | 328..1312 | 17..1001 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:38 Download gff for
BS29938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0334-RA | 421..1405 | 17..1001 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:43:40 Download gff for
BS29938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0334-RA | 421..1405 | 17..1001 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:43:40 Download gff for
BS29938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4704195..4704517 | 498..820 | 100 | -> | Plus |
| X | 4703639..4704119 | 17..497 | 100 | -> | Plus |
| X | 4704588..4704768 | 821..1001 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:38 Download gff for
BS29938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4598228..4598550 | 498..820 | 100 | -> | Plus |
| arm_X | 4597672..4598152 | 17..497 | 100 | -> | Plus |
| arm_X | 4598621..4598801 | 821..1001 | 100 | | Plus |
BS29938.pep Sequence
Translation from 16 to 1002
> BS29938.pep
MQTIRRLETAAGNLYKEKIIRGFCHLYSGQEACAVGMKAAMRDVDNIISA
YRVHGWTYLMGVSPSGVLAELTGVQGGCARGKGGSMHMYAPNFYGGNGIV
GAQVPLGAGVGLACKYKGNGGMCLALYGDGAANQGQVFEAYNMAYLWKLP
VIFVCENNNYGMGTSSERASCNTDYYTRGDALPGIWVDGMDVLAVRSATE
FAINYVNTHGPLVMETNTYRYSGHSMSDPGTSYRTREEIQEVRQKRDPIT
SFKELCIELGLITTDEVKAIDLKVRKEVDEATAFAKSDAELGVSHLWTDV
YSNNLEPKLRGTIAYDIDHIQERKGVNH*
BS29938.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0334-PB | 328 | CG7010-PB | 1..328 | 1..328 | 1744 | 100 | Plus |
| l(1)G0334-PD | 399 | CG7010-PD | 72..399 | 1..328 | 1744 | 100 | Plus |
| l(1)G0334-PA | 399 | CG7010-PA | 72..399 | 1..328 | 1744 | 100 | Plus |
| l(1)G0334-PC | 443 | CG7010-PC | 116..443 | 1..328 | 1744 | 100 | Plus |
| CG7024-PA | 479 | CG7024-PA | 70..390 | 1..321 | 1075 | 61.1 | Plus |
