BS29941.complete Sequence
1925 bp assembled on 2012-06-18
GenBank Submission: KX802204
> BS29941.complete
GAAGTTATCAGTCGACATGACCACGCCTGTGCCCCGCCGCACCAAGGACA
TGATGGCACTGGGACTGGACTCCGACTCCGAGGACGACTTTAACACGCCA
TACCGACCACGACAAGCGGCGGCGGGAGAACGAAAACAGCAGCCGGTGGC
GTCTTTCCAAGTCCAAACGAGGGGCAAGGAGAACGAACCGCATCCCCTGC
CCATAAATATGCTACCTCGCCGAGTGTCCGAGTTGACTATGATGGATTCG
GACAGTGACGAGGAGGACATCAAGAGCAATCACAACCTTAACTGCGCCAT
CCTAAACGATTCCTTTGTGCTGAGCCCATCCCAAGAGTTAACAAACAGCA
ACAGCAACATAACCACTCGTAGAACACCAAGTGCCGCCCCCCTTAAGCAA
TCCGATTCGAATCTCTCGTTCCTGGGAAGATTCAACGACATGGGCATCAA
TTGCAGCAGTCAAGGATCCCCTGTTGCGAATTCGGAAAAACAGGTGGCCA
AAAAGACAGCACCCACGCTTCAAGCTGCACCAAGTGCCACCGAAAGGCGC
CCACTCCAAGAGACAGAGACGCCACTGCGTAATGAATTACCCTCCACCTC
GAAGACGAAGCCGGATGCAGACTTCATTACCCCCCAAGTACGAACAATTG
GTTCCACACTGGCGGGAAAAAGTCGGAGTGCGGTGTCCAATGACTTCCGT
GCGCAGAAAGTGCTCTTCCAAACACCTATGACCGTGAGTCGTGCTGCTCC
AGTGGCCTCCGATAGCATAAGCTTCTCCCTGTGCGACACCATCACAGAAA
GCCCGGACATTCCGGAGCCTCCGAAAAAGGCAGAACCACCAAAGAGTCAG
CATCCTTCCAAAAAGTCCCTAGATCATGTTTTCCGGGAGTCGGACAAGGA
TAACGTGCCAGACAAAGTGGATAATGTGGAACCAAAGGAGCTGGTATCGA
TTCCCGCAGTTGCTGTACCTCCAGAGCAGCCTTCCCACAAGACATCTAAT
ATTTTAAAAATCAAGAATCATGAGTATACGATTGATAAGAAACTGGGCTG
TGGCGGCTCCAGCTCTGTTTTTTTGGCACGCCGATCGGATTCCGGAAATG
AGTTCGCCCTGAAGGTGGTGGATCTGCAGGCCGATCCACAAGTGGTGCAG
GGATATCTAAACGAAACCAAACTTCTGGCAAAGCTACAAGGGAACGTTTG
TGTTGTGGCACTTTACGATTATCAACTTGTGCGCGAGGAGTCCAAGCTGT
ACATGGTGATGGAGAAAGGTGACTGCGACTTGAACAAGATCCTGCAGAGC
TACACCACCAACCTTCCTCTCTATAGCCTGATGAACATCCTGTACCAAAT
GCTGCAAGCGGTCAACTACATTCACCAACACGGTGTCATCCATTCGGATC
TCAAGCCGGCAAATTTCCTGATGGTCAGCGGCAGACTGAAGTTGATCGAT
TTTGGCATAGCCAGCAATATCGCTGTGGACTCGACGAGCATCATCAAATT
CTCGCAGGCGGGCACCTTTAACTACATTAGTCCGGAGGCGTTGACGGACA
CCTCCACGGGGAATAGCCCGATGCGCAGAGCCGATCAGCCGAAGATCAAG
ATCTCGACCAAATCGGACGTGTGGTCGCTGGGCTGCATCCTTTACCTGCT
ACTCTACCAAAAGACACCGTTCGGCCACATCCGAAACGTCTATGCCAAGA
TGAGTGCAATCACCACACCGGGCACCAGCATCGAGTATCCTGCCATTCCG
CCCTACTATCCCATCATGCTGGTTCATATGGCCAAGAACTGCCTACAGTT
GAATCCCAAAAAGCGGCCGTCGTGCACCGAACTACTACAGTACCCATTCC
ATATGATCATTCCGCTGCAGAACCTGCAGATACCCAGCAGAACCGCCAAC
AGCAATTAAAAGCTTTCTAGACCAT
BS29941.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ald-RA | 1893 | CG7643-PA | 1..1893 | 17..1909 | 9465 | 100 | Plus |
| ald-RB | 2019 | CG7643-PB | 1..1761 | 17..1777 | 8805 | 100 | Plus |
| ald-RB | 2019 | CG7643-PB | 1790..1921 | 1778..1909 | 660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:35:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ald-RA | 2113 | CG7643-RA | 101..1993 | 17..1909 | 9465 | 100 | Plus |
| ald-RB | 2141 | CG7643-RB | 101..1861 | 17..1777 | 8805 | 100 | Plus |
| ald-RB | 2141 | CG7643-RB | 1890..2021 | 1778..1909 | 660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17671850..17672857 | 214..1221 | 5040 | 100 | Plus |
| 3R | 32079331 | 3R | 17672921..17673476 | 1222..1777 | 2780 | 100 | Plus |
| 3R | 32079331 | 3R | 17671371..17671567 | 17..213 | 985 | 100 | Plus |
| 3R | 32079331 | 3R | 17673577..17673708 | 1778..1909 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:35:43 has no hits.
BS29941.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-18 13:51:05 Download gff for
BS29941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ald-RA | 74..1964 | 17..1907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:47 Download gff for
BS29941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ald-RA | 101..1991 | 17..1907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:47:25 Download gff for
BS29941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ald-RA | 101..1991 | 17..1907 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:47:25 Download gff for
BS29941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17671371..17671567 | 17..213 | 100 | -> | Plus |
| 3R | 17671850..17672857 | 214..1221 | 100 | -> | Plus |
| 3R | 17672921..17673476 | 1222..1777 | 100 | -> | Plus |
| 3R | 17673577..17673706 | 1778..1907 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:47 Download gff for
BS29941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13497093..13497289 | 17..213 | 100 | -> | Plus |
| arm_3R | 13497572..13498579 | 214..1221 | 100 | -> | Plus |
| arm_3R | 13498643..13499198 | 1222..1777 | 100 | -> | Plus |
| arm_3R | 13499299..13499428 | 1778..1907 | 100 | | Plus |
BS29941.pep Sequence
Translation from 16 to 1908
> BS29941.pep
MTTPVPRRTKDMMALGLDSDSEDDFNTPYRPRQAAAGERKQQPVASFQVQ
TRGKENEPHPLPINMLPRRVSELTMMDSDSDEEDIKSNHNLNCAILNDSF
VLSPSQELTNSNSNITTRRTPSAAPLKQSDSNLSFLGRFNDMGINCSSQG
SPVANSEKQVAKKTAPTLQAAPSATERRPLQETETPLRNELPSTSKTKPD
ADFITPQVRTIGSTLAGKSRSAVSNDFRAQKVLFQTPMTVSRAAPVASDS
ISFSLCDTITESPDIPEPPKKAEPPKSQHPSKKSLDHVFRESDKDNVPDK
VDNVEPKELVSIPAVAVPPEQPSHKTSNILKIKNHEYTIDKKLGCGGSSS
VFLARRSDSGNEFALKVVDLQADPQVVQGYLNETKLLAKLQGNVCVVALY
DYQLVREESKLYMVMEKGDCDLNKILQSYTTNLPLYSLMNILYQMLQAVN
YIHQHGVIHSDLKPANFLMVSGRLKLIDFGIASNIAVDSTSIIKFSQAGT
FNYISPEALTDTSTGNSPMRRADQPKIKISTKSDVWSLGCILYLLLYQKT
PFGHIRNVYAKMSAITTPGTSIEYPAIPPYYPIMLVHMAKNCLQLNPKKR
PSCTELLQYPFHMIIPLQNLQIPSRTANSN*
BS29941.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ald-PA | 630 | CG7643-PA | 1..630 | 1..630 | 3248 | 100 | Plus |
| ald-PB | 672 | CG7643-PB | 1..587 | 1..587 | 3018 | 100 | Plus |
| Eip63E-PH | 501 | CG10579-PH | 180..483 | 333..627 | 235 | 26.2 | Plus |
| Eip63E-PM | 509 | CG10579-PM | 188..491 | 333..627 | 235 | 26.2 | Plus |
| Eip63E-PC | 509 | CG10579-PC | 188..491 | 333..627 | 235 | 26.2 | Plus |
