BS29942.complete Sequence
1229 bp assembled on 2012-05-24
GenBank Submission: KX803119
> BS29942.complete
GAAGTTATCAGTCGACATGTCCACCGCCTTCCTTACCCTCATCGCCGTCA
TCGTGTGCATCCTGTTCCGCATCCTTAATGTTCACAGCCAGCCGCTGAAG
CCCAGTGTGTGGTGCCTTGATGCCCACTTCCTCGACTGCCTCTACAAGAT
CGCGCCCGTCCTAAGGGAACCATACATTCCCCCGCGACTTTGGGGCTTTA
GTGGCCATGTGCAGACGGTCTTGCACAGCATTGTTGGCCGGGTACGATGT
CCCTGGCCACTCGGAGAACGTGTTTACATGTCGCTAAAGGATGGCTCCAC
ATTGACCTACGACTTGTACCAGCCACTCAACGAACAGGAGGATGACATCA
CGGTGGCCATTTGCCCGGGCATCGCCAACAGCTCGGAATCGGTGTACATT
CGCACCTTCGTGCACTTGGCCCAGTGCAATGGATACCGCTGTGCGGTGCT
AAATCACATTGGCGCACTGCGCAGTGTCCAGGTGACCTCCACACGCATTT
TCACCTACGGCCACACGGAGGATTTCGCGGCCATGGTAGAGCATTTGCAC
CAGAAGTACCGCCAAAGTCGAATTGTCGCGGTTGGTTTCAGTCTGGGCGG
CAATCTGGTCACCAAGTACATGGGCGAGGACCAGAAGACAAAGCCAGACA
AGGTCATTGGAGGCATATCCATATGTCAAGGCTACAATGCCGTCGAAGGC
ACCAAGTGGCTGCTCAACTGGCAGAATTTCCGCCGCTTTTACCTATACAT
CATGACTGAGAACGTAAAGAGCATTATCCTGCGACATCGACATATCCTCC
TGTCCGACGAGGTCAAGGCTCGGCATAATCTCAACGAGCGCGAAATCATC
GCGGCTGCCACTCTGCCCGAGTTGGATGAGGCTTACACGCGGAGAGTGTA
CAACTTTCCCTCCACCCAGGAGTTGTACAAGTGGAGCTCGTCGCTGTTTT
ACTTCGATACGATCAAGAAGCCAATGATCTTCATCAACGCCAAGGATGAT
CCCTTGATCCCGGAGGATTTGCTGCATCCCATCAAGGAGTATGCCACGAC
GCGTCAAAACACCGCCTATGTGGAGGTGGCCCATGGCGGTCATCTGGGCT
TCTATGAGGGCGGCTTCCTGTACCCGAACCCTGTCACTTGGCTGGACCGT
ACGCTTGTGGCGATGGTTGGGTCCTTGGTCATGATGCACGAAGTCGGCAA
GGTGGCCCCTTAGAAGCTTTCTAGACCAT
BS29942.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:27:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hydr2-RB | 1197 | CG3488-PB | 1..1197 | 17..1213 | 5985 | 100 | Plus |
| Hydr2-RA | 1197 | CG3488-PA | 1..1197 | 17..1213 | 5985 | 100 | Plus |
| Hydr2-RC | 936 | CG3488-PC | 1..936 | 278..1213 | 4680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:27:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hydr2-RB | 2733 | CG3488-RB | 275..1472 | 16..1213 | 5990 | 100 | Plus |
| Hydr2-RA | 2259 | CG3488-RA | 275..1472 | 16..1213 | 5990 | 100 | Plus |
| Hydr2-RC | 2383 | CG3488-RC | 555..1596 | 172..1213 | 5210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:27:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3167203..3167558 | 341..696 | 1780 | 100 | Plus |
| 2L | 23513712 | 2L | 3167624..3167973 | 697..1046 | 1750 | 100 | Plus |
| 2L | 23513712 | 2L | 3166970..3167139 | 172..341 | 850 | 100 | Plus |
| 2L | 23513712 | 2L | 3168035..3168201 | 1047..1213 | 835 | 100 | Plus |
| 2L | 23513712 | 2L | 3163919..3164074 | 16..171 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:27:28 has no hits.
BS29942.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:57 Download gff for
BS29942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hydr2-RA | 274..1470 | 17..1213 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:41 Download gff for
BS29942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hydr2-RA | 276..1472 | 17..1213 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:43:45 Download gff for
BS29942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hydr2-RA | 276..1472 | 17..1213 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:43:45 Download gff for
BS29942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3163920..3164074 | 17..171 | 100 | -> | Plus |
| 2L | 3166970..3167139 | 172..341 | 100 | -> | Plus |
| 2L | 3167204..3167558 | 342..696 | 100 | -> | Plus |
| 2L | 3167624..3167973 | 697..1046 | 100 | -> | Plus |
| 2L | 3168035..3168201 | 1047..1213 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:41 Download gff for
BS29942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3163920..3164074 | 17..171 | 100 | -> | Plus |
| arm_2L | 3166970..3167139 | 172..341 | 100 | -> | Plus |
| arm_2L | 3167204..3167558 | 342..696 | 100 | -> | Plus |
| arm_2L | 3167624..3167973 | 697..1046 | 100 | -> | Plus |
| arm_2L | 3168035..3168201 | 1047..1213 | 100 | | Plus |
BS29942.pep Sequence
Translation from 16 to 1212
> BS29942.pep
MSTAFLTLIAVIVCILFRILNVHSQPLKPSVWCLDAHFLDCLYKIAPVLR
EPYIPPRLWGFSGHVQTVLHSIVGRVRCPWPLGERVYMSLKDGSTLTYDL
YQPLNEQEDDITVAICPGIANSSESVYIRTFVHLAQCNGYRCAVLNHIGA
LRSVQVTSTRIFTYGHTEDFAAMVEHLHQKYRQSRIVAVGFSLGGNLVTK
YMGEDQKTKPDKVIGGISICQGYNAVEGTKWLLNWQNFRRFYLYIMTENV
KSIILRHRHILLSDEVKARHNLNEREIIAAATLPELDEAYTRRVYNFPST
QELYKWSSSLFYFDTIKKPMIFINAKDDPLIPEDLLHPIKEYATTRQNTA
YVEVAHGGHLGFYEGGFLYPNPVTWLDRTLVAMVGSLVMMHEVGKVAP*
BS29942.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:38:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hydr2-PB | 398 | CG3488-PB | 1..398 | 1..398 | 2118 | 100 | Plus |
| Hydr2-PA | 398 | CG3488-PA | 1..398 | 1..398 | 2118 | 100 | Plus |
| Hydr2-PC | 311 | CG3488-PC | 1..311 | 88..398 | 1642 | 100 | Plus |
| Hydr1-PE | 438 | CG8058-PE | 20..366 | 9..365 | 278 | 24.7 | Plus |
| Hydr1-PD | 438 | CG8058-PD | 20..366 | 9..365 | 278 | 24.7 | Plus |
