BS29944.complete Sequence
2093 bp assembled on 2012-06-18
GenBank Submission: KX802407
> BS29944.complete
GAAGTTATCAGTCGACATGAAAAGTCATTGGATGCCCGTCACCTGCTTAC
TGCTTGGCAGTCTCCAGGTTCTATTGGCTTACACCGAAAACGACTTCTTG
GTGAACGCCAATCGCAAAGAACTAACTGATTCCCCTTTGTTTGAATATGA
TAATGTCAGAAAGCCCACACCAACCAAGGGATTGTTGTACCCCAGGGATT
CGGAGACCCGTGAAGTGCGGAGCTTGGATGGAATGTGGCAACTGGTTAGG
AGTGATCCATATGACCCCTTACAGGGAATTAGGGAAAAGTGGTTTATGGA
TGCCTTGAGAAAAACCGGAAGGGAGATTATTTCGATGCCAGTGCCTGCCT
CCTATAACGACATCACTACAGATAACTTACGAGATCACGTTGGAACCGTA
TGGTATGAGCGTACTTTTTTTGTGCCGCGCTCCTGGAAGACTATGCAACG
CACTTGGTTGCGATTTAGCAGCGTTCACTATTCGGCCGTGGTATGGATCA
ACGGAAGGAACGCCACAAGTCACTCCATTGGCCACCTACCCTTTGAGTCA
GAGATCTCGGGACTGCTCAGCTTTGGCGGCGATAACAGGATCACGGTGAT
GTGTGACAATCGTTTGAGCAACCGCACCATTCCTCAGGGTTCTGTTTACA
AGGTGGCTACGGATGACGGCACCGTGCCCATCCAGAGTTACACTTTCGAT
TTTTTTAACTACGCGGGAATCCACCGGAGTGTACACTTGTACACGACCCC
GCTGCTGCACATAAGCGATTTGGAGGTCACCACCCAACTAACTAAAGAAG
GATTGGGCCGCATAGACTACCGCGTGTGGTTGGATGCTAGCAAGGAGGGC
CTCCAAATCCAGCCCATCCAACTTCGGGTGCAACTAAGGGACAAAGATGG
TCATGTGGCCGCCCAGCAGATCAACAAGGCGGTCTACCATGGTACTCTGC
TGGTGCCAAATGCAACTCCCTGGTGGCCCTACCTAATGCATTCCGATCCC
GGCTACCTGTATAATCTTCAATTCGAGCTGTTTGTGGCCAGCAATGAGAA
GGAGTTGGAATCTCTGCAGGATACCTACCGCCTCCCAGTGGGCATACGTA
GCTTAAGTTGGGACAACGACAGCCTGCTGCTGAATGGAAAACCCCTCTAT
CTGCGGGGATTTGGACGGCACGAGGACTCCGATATCCGCGGGAAGGGATT
GGATAATGCGCTTCTTGCTAGAGATTTTAACCTGCTGAAGTGGACTGGAG
CCAATGCATATCGCACCTCTCACTATCCTTATTCCGAAGAGTCAATGCAG
TTTGCCGATCAGCATGGTATTATGATTATTGACGAATGCCCTGCTGTCAA
TATAGATATCTTCGAGCCGCAGCTACTGGAGAATCACATGTCCTCGCTGG
AGCAACTGATCCACCGGGACAGAAACCATCCAAGTGTTGTTGCATGGTCG
GTAGCCAACGAGCCGAGATCGAACAAGCAGGGAGCCCTTAAATACTTTGA
ATTCCTGGTAAACTATGTAAGAGAAATAGCTCACGGACGACCTCTAACCG
CGGCTATAAATGCCAACTCTTCCAGTTGCCATTTGGCGCAGTTTCTGGAC
ATCGTGGGTTTCAATCGCTATAACTCTTGGTATCAGAACTCGGGCCGTAC
TGACATGATACTTAACCTGTTGACGATAGAGGCCCAGAGTTGGCGGGATA
GGTTCGGAAAGCCTGTCATCCAATTTGAGTACGGCGGCGACACTATGGAG
GGCATGCACTCACTTCCCGCCTTTATTTGGTCGGAGGAATACCAGGTTGA
GCTCTTCTCTCGCCATTTCAAGGCTTTCGACGAGTTACGCGGAAGAGGAT
GGTTTATTGGAGAGTTTGTTTGGAACTTCGCCGATTTTCGGACCGCGCAG
ACTATTACCCGCGTGGGCGGCAACAAAAAGGGAGTCTTTACAAGGAACCG
ACAACCCAAAGAAGTGGCTCACATTCTTAGGCGGCGGTACTTCGCATTAG
CCAAGGAGTTGGATATGTTTGGGCTGCCTGAGGATCTCACTGTTTACATT
TCCAAGCATATCCATAACGAGCTTTGAAAGCTTTCTAGACCAT
BS29944.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2135-RA | 2061 | CG2135-PA | 1..2061 | 17..2077 | 10305 | 100 | Plus |
| CG15117-RF | 1872 | CG15117-PF | 964..1241 | 1160..1437 | 385 | 75.9 | Plus |
| CG15117-RE | 1872 | CG15117-PE | 964..1241 | 1160..1437 | 385 | 75.9 | Plus |
| CG15117-RF | 1872 | CG15117-PF | 1582..1736 | 1778..1932 | 205 | 75.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:35:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2135-RA | 2331 | CG2135-RA | 91..2152 | 17..2078 | 10310 | 100 | Plus |
| CG15117-RF | 2707 | CG15117-RF | 1583..1860 | 1160..1437 | 385 | 75.9 | Plus |
| CG15117-RE | 2380 | CG15117-RE | 1256..1533 | 1160..1437 | 385 | 75.9 | Plus |
| CG15117-RF | 2707 | CG15117-RF | 2201..2355 | 1778..1932 | 205 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:35:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31770592..31771758 | 1183..17 | 5835 | 100 | Minus |
| 3R | 32079331 | 3R | 31770218..31770534 | 1500..1184 | 1585 | 100 | Minus |
| 3R | 32079331 | 3R | 31769901..31770162 | 1762..1501 | 1310 | 100 | Minus |
| 3R | 32079331 | 3R | 31769472..31769648 | 2078..1902 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 31769708..31769846 | 1901..1763 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 19123517..19123695 | 1338..1160 | 325 | 78.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:35:48 has no hits.
BS29944.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-18 13:51:06 Download gff for
BS29944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2135-RA | 96..2155 | 17..2076 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:50 Download gff for
BS29944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2135-RA | 91..2150 | 17..2076 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:47:26 Download gff for
BS29944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2135-RA | 91..2150 | 17..2076 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:47:26 Download gff for
BS29944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31769474..31769648 | 1902..2076 | 100 | <- | Minus |
| 3R | 31769708..31769846 | 1763..1901 | 100 | <- | Minus |
| 3R | 31769901..31770162 | 1501..1762 | 100 | <- | Minus |
| 3R | 31770218..31770534 | 1184..1500 | 100 | <- | Minus |
| 3R | 31770592..31771758 | 17..1183 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:50 Download gff for
BS29944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27595196..27595370 | 1902..2076 | 100 | <- | Minus |
| arm_3R | 27595430..27595568 | 1763..1901 | 100 | <- | Minus |
| arm_3R | 27595623..27595884 | 1501..1762 | 100 | <- | Minus |
| arm_3R | 27595940..27596256 | 1184..1500 | 100 | <- | Minus |
| arm_3R | 27596314..27597480 | 17..1183 | 100 | | Minus |
BS29944.pep Sequence
Translation from 16 to 2076
> BS29944.pep
MKSHWMPVTCLLLGSLQVLLAYTENDFLVNANRKELTDSPLFEYDNVRKP
TPTKGLLYPRDSETREVRSLDGMWQLVRSDPYDPLQGIREKWFMDALRKT
GREIISMPVPASYNDITTDNLRDHVGTVWYERTFFVPRSWKTMQRTWLRF
SSVHYSAVVWINGRNATSHSIGHLPFESEISGLLSFGGDNRITVMCDNRL
SNRTIPQGSVYKVATDDGTVPIQSYTFDFFNYAGIHRSVHLYTTPLLHIS
DLEVTTQLTKEGLGRIDYRVWLDASKEGLQIQPIQLRVQLRDKDGHVAAQ
QINKAVYHGTLLVPNATPWWPYLMHSDPGYLYNLQFELFVASNEKELESL
QDTYRLPVGIRSLSWDNDSLLLNGKPLYLRGFGRHEDSDIRGKGLDNALL
ARDFNLLKWTGANAYRTSHYPYSEESMQFADQHGIMIIDECPAVNIDIFE
PQLLENHMSSLEQLIHRDRNHPSVVAWSVANEPRSNKQGALKYFEFLVNY
VREIAHGRPLTAAINANSSSCHLAQFLDIVGFNRYNSWYQNSGRTDMILN
LLTIEAQSWRDRFGKPVIQFEYGGDTMEGMHSLPAFIWSEEYQVELFSRH
FKAFDELRGRGWFIGEFVWNFADFRTAQTITRVGGNKKGVFTRNRQPKEV
AHILRRRYFALAKELDMFGLPEDLTVYISKHIHNEL*
BS29944.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:04:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2135-PA | 686 | CG2135-PA | 1..686 | 1..686 | 3669 | 100 | Plus |
| CG15117-PD | 648 | CG15117-PD | 16..644 | 47..679 | 2130 | 61.7 | Plus |
| CG15117-PC | 656 | CG15117-PC | 24..652 | 47..679 | 2130 | 61.7 | Plus |
| CG15117-PA | 656 | CG15117-PA | 24..652 | 47..679 | 2130 | 61.7 | Plus |
| CG15117-PB | 670 | CG15117-PB | 38..666 | 47..679 | 2130 | 61.7 | Plus |
