BS29945.complete Sequence
1943 bp assembled on 2012-06-18
GenBank Submission: KX802024
> BS29945.complete
GAAGTTATCAGTCGACATGCTGTCGCTACTCCTGGTTCTGACGACGCTTG
CCAGGATCCACGCCCACTACACGAGCGGAGATGTGGTCTATCACACAATG
CCGCACTTTTGGACGGGCGTGGGCTTCTGTCCCGCCGGACGCATTGATCA
CGAGGGGATTAGCGCCGCCCTGGGCGATCCAGCCCTTCGACTTAATCTTC
GCCTGATTGCAGCATTGCCCGTGGGCGCGGTGACCCACATTCGCATCCAC
TGGCTGCTGGAGCTGATACAATTCTGGCAGTACGACCCCAGCGGAATACC
GATTTATGATTTTTCCAAGTTCGATGACTTCATTGATTTCCTACACGAGG
AACTGCGCTTGTCCCCCGTTCTGGAGTGGATGGGCAATCTGGGTGGGGTT
TTTTCGGAAAACCCCATGCAGCAATCCTTCTACTGGGAGCACTTGGTTAA
GACCACGATTAACCACCAGATAGCACGACACGGTTCCTCCAGATTGGTCA
ACTGGCGCTATGAGACATGGAATGAACCGGACCTTCGTGGGTATAACAAG
CAAAACTTTACGGCACACACCTTTCTGGATTACGTTCAAGCTGTGCGGCG
GGGTTTGAGTAAAGCTGGAAACCTGGACAACCAGGACGGAAAGGTTCCAC
TGCCCATGTATCGCTCCCTGCGCGGCCCTGCAGGACTCTTTAAGGACTCG
AATCATCCGCTCTGCTGGAATCTATTGGAGCTATGCAGTCAAAGAGTGGT
TTACTGTCCCATCGACATACTGACTTTCCACCGAAAGGGAATCGAAGGCA
CTGCCACGGAAATCGTAAATGGTTCGCTTTCCTTGATGGCCAAAATCTAT
GAGGAGTATCCCAATCTCAAGCAGCTGCCGGTGGCCAATGATGAAGCCGA
TCCTGTGGCCGGTTGGAGCACCTCCCGGGATTTTCAGGCGGATGTGCGGT
ATGGAATCACACTGATATCTACGGTAATGCAGTTCTGGCATGCCAAGCTG
GCCGGTGGTCCACTGAGTCGCTTGGAGTCGATTAGTCATGACAACGCCTT
CCTGAGCTACCATCCCCACGAGTTCACACAGCGCACCCTTCTAGCCCACT
TCAGGATGAACGAAACCAAACCACCGCACTCGCAGCTCGTTCAGAAACCC
GTATACGCTGCTCTGGGAATGCTGGCGAAGCTGGGCACCCGGGCTGCGGA
CGTGGAAATGGTTAATATGGATACTAAACATAGCGTCCAGGTCCTGCGTA
CAGTATCCGGTGGATTAGGCGGTCCTGGTCAGTATATGGCCACAATATTT
CTGAGTCCCGAGGAGGCGGGTCCAAAGATGACAGCCTTTCATCACAAGTA
CACGCTAAACATGTCGATAGCGAATGAGTCGGCCTTCGTCACCGAGCTCC
TGGTGCCAAAGGAAACGGATCCGTACTACATATGGCAGCAAGCTGGAAGT
CCGGCTTATCCCAACGCCACTCTAAGGGAAGCGATGCGAAGAGCCCAAGC
ACCTAGACTCTACAAGACGGGACCCATCTGGCAGTACAACAGCGAGCTAG
TTATCAACTCCGCCAGCATCCCACTGCCCTGGGCGATGCTGCTCCGGGTG
TGTTCCGCATCTTGGCCCAAACTGCGACGACCGCAGCAACTTTCCATCGC
AGAGGTGACTCAGCGTGAGGTGTTCATTAGCTGGATGGAACACCCCAAAT
CCACGCAGTGCCTTCTCAGCTACGAGGTGTGGTTTAAGGAACGCGATAAT
CTGGGTCGCTCCGCCGACTGGATGCTCATCTCACAGGGCTGGCATCTGCC
ATATCCGTCGTTTCAGTATGCGCCCGGCGATAAGGGATCCGTCAATGGTT
TCTATAAAGTTCGCGGTGTGGATGTGTTTAATGAAACCAGTCCCTACTCA
CAAATAGTCGAATATCTGGAGTTGTAGAAGCTTTCTAGACCAT
BS29945.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6201-RA | 1911 | CG6201-PA | 1..1911 | 17..1927 | 9555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:36:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6201-RA | 2308 | CG6201-RA | 113..2023 | 17..1927 | 9555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11110978..11111935 | 1849..892 | 4790 | 100 | Minus |
| 2L | 23513712 | 2L | 11112493..11112949 | 473..17 | 2285 | 100 | Minus |
| 2L | 23513712 | 2L | 11112014..11112433 | 891..472 | 2100 | 100 | Minus |
| 2L | 23513712 | 2L | 11110842..11110922 | 1927..1847 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:36:16 has no hits.
BS29945.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-18 15:28:21 Download gff for
BS29945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6201-RA | 115..2025 | 17..1927 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:02 Download gff for
BS29945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6201-RA | 113..2023 | 17..1927 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:47:34 Download gff for
BS29945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6201-RA | 113..2023 | 17..1927 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:47:34 Download gff for
BS29945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11110842..11110921 | 1848..1927 | 100 | <- | Minus |
| 2L | 11110980..11111935 | 892..1847 | 100 | <- | Minus |
| 2L | 11112014..11112431 | 474..891 | 100 | <- | Minus |
| 2L | 11112493..11112949 | 17..473 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:02 Download gff for
BS29945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11110842..11110921 | 1848..1927 | 100 | <- | Minus |
| arm_2L | 11110980..11111935 | 892..1847 | 100 | <- | Minus |
| arm_2L | 11112014..11112431 | 474..891 | 100 | <- | Minus |
| arm_2L | 11112493..11112949 | 17..473 | 100 | | Minus |
BS29945.pep Sequence
Translation from 16 to 1926
> BS29945.pep
MLSLLLVLTTLARIHAHYTSGDVVYHTMPHFWTGVGFCPAGRIDHEGISA
ALGDPALRLNLRLIAALPVGAVTHIRIHWLLELIQFWQYDPSGIPIYDFS
KFDDFIDFLHEELRLSPVLEWMGNLGGVFSENPMQQSFYWEHLVKTTINH
QIARHGSSRLVNWRYETWNEPDLRGYNKQNFTAHTFLDYVQAVRRGLSKA
GNLDNQDGKVPLPMYRSLRGPAGLFKDSNHPLCWNLLELCSQRVVYCPID
ILTFHRKGIEGTATEIVNGSLSLMAKIYEEYPNLKQLPVANDEADPVAGW
STSRDFQADVRYGITLISTVMQFWHAKLAGGPLSRLESISHDNAFLSYHP
HEFTQRTLLAHFRMNETKPPHSQLVQKPVYAALGMLAKLGTRAADVEMVN
MDTKHSVQVLRTVSGGLGGPGQYMATIFLSPEEAGPKMTAFHHKYTLNMS
IANESAFVTELLVPKETDPYYIWQQAGSPAYPNATLREAMRRAQAPRLYK
TGPIWQYNSELVINSASIPLPWAMLLRVCSASWPKLRRPQQLSIAEVTQR
EVFISWMEHPKSTQCLLSYEVWFKERDNLGRSADWMLISQGWHLPYPSFQ
YAPGDKGSVNGFYKVRGVDVFNETSPYSQIVEYLEL*
BS29945.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:05:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6201-PA | 636 | CG6201-PA | 1..636 | 1..636 | 3412 | 100 | Plus |
