BS29956.complete Sequence
1721 bp assembled on 2012-06-18
GenBank Submission: KX803028
> BS29956.complete
GAAGTTATCAGTCGACATGCTGCCGAGCCTGGATACCTTAATGCGTTGCT
CGAAGCGAGTTCTGCAATCGCCGCTGGAGGCGGCGGCCAGCCAGATGCGG
AATGGGCACAGCAAGTCGGCCGCCGGGGGCATCTACGGCCCCTTTACGCC
GGACAACGATCTCAGCTGCTCGGGACGGGGCGATTGCGTCAACAACACCT
GCGTCTGCGACATTCGGTACGCGGGCAACGAGTGCGACATCTTCAATCTG
CCCTACTACGCCGGAATCTCCACCGTCTTCTACGTGGTGGCCCTCGTCTC
GGTCATCCAGCTGCTCATCTGCATCGTGGCCGAATATCAGCGGCTGAAGC
AGCCCTCCGTACTCCGCGCCTGTCGCATCACCACCCAGAAACTGCTCTAC
TTCATGGTCTTTGTGGCGGCCTCGTTGCGAGGTGCCTACTTCACCACACC
CCTGGATCTGCAGCCACAATGGGCTGTCACCCTGATGTCCGCCTACTATC
CATTGCTCATGACCTGCGCCTCGCTAATTGTCTGCATGTGGGCCGAGATC
TTTCACCTGCGCGACATCCGCTGGGAGAAGTCGCAGTTTCTGTCGAAGAG
CTTCCTCGGCTTCGTGGCCTTCAACTTCTTTCTGTACAGCCTGTTTGGCA
TAGAGGTCTTCAACTCGCTGATCAACGCGGAGCGTCGCGACTACGCCCAC
ATCTTCAACGGATGCTATGCAGTATTACTCCTGATCGTGGTGGTCTTCTT
CCTCATCTACGGCGTGGAAGTGTTCTTTAAGCTGCGCGGCGGTTTCGTTT
ACGACCAGACGGGCAAGATTCTCGGTCCCAGCGAGGCAATTGTGAATGCC
TCACAATTGCATCAGTCGCGATTCGGACTGCTGTTTCAGGCCGTGATGCT
AATCGTGATTGTGGGCTTTCTGACTTCCGAAACTTTGGGCGACTTCTGGA
AGACCAAGGTTCCAGTTAACTCGCGCAACTGGCATGACATCATTTTTCGC
ATCGCCGAGATCGGTGTGGCTCTCTGGTTTCCCTGCTGCCTTTGGAACTC
GATGGCTCCTGAACAGCTCTGGATTCTAAATCCTCGCAAGCTTCTATCCC
GCCAAATTGATCCGTCGATACCCACTCTAAATGCGGAGACCAACAAGCTC
TCGCCCGAAGAGGGCCAGTCGTTTTTAACCAAAAAGGATTGCTGGATCTG
TTACGACTCCGACAAGCCAGAGCCCCTCATCCAGCCCTGCCGCTGCACTG
GCGACGTAAGTTCGGTGCACCACGAGTGTCTCAAGCGCTGGCTGGTGGAG
AGCTGCAGCAATTCGGAGGCGCAGTTGTCGTGCAAGGTCTGCGGACATCC
CTACGAGATCGAAAAGTCCAAAAAACTCGAATGGGACAAGGGCTTCACCA
TTCAGCATTGGTCCAAGACGGTTATATTGATCACCTTGATGTGCGTAACC
GGTGCCACCGCCTGGGTGGTGATCCAAATGTACGTTGATCCGCTGGTGCG
CGTGATGACAGTGGGCATCGCCGTGCTCATTGGCTATGTGTGCGTCAAGT
GTTTGGGCGAGAACACCGTGGTGGCCTATCAGCGGGCCAAAGTTAGCTCA
ATCAACATCGTGACCAGCTCGGAGATGGAGAAGTTGCACACCATTTGCGA
GGAGGTCAGCGCCAGCACCTCCGCAGAGGCGGTTCGGGCGGGAGCTGCGT
CCTAAAAGCTTTCTAGACCAT
BS29956.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2991-RC | 1689 | CG2991-PC | 1..1689 | 17..1705 | 8445 | 100 | Plus |
| CG2991-RA | 1689 | CG2991-PA | 1..1689 | 17..1705 | 8445 | 100 | Plus |
| CG2991-RB | 1689 | CG2991-PB | 1..1689 | 17..1705 | 8445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2991-RC | 2889 | CG2991-RC | 320..2008 | 17..1705 | 8445 | 100 | Plus |
| CG2991-RA | 3088 | CG2991-RA | 519..2207 | 17..1705 | 8445 | 100 | Plus |
| CG2991-RB | 2998 | CG2991-RB | 429..2117 | 17..1705 | 8445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2864984..2865418 | 17..451 | 2175 | 100 | Plus |
| 2L | 23513712 | 2L | 2866814..2867230 | 958..1374 | 2085 | 100 | Plus |
| 2L | 23513712 | 2L | 2866330..2866742 | 546..958 | 2065 | 100 | Plus |
| 2L | 23513712 | 2L | 2867337..2867667 | 1375..1705 | 1655 | 100 | Plus |
| 2L | 23513712 | 2L | 2865482..2865577 | 452..547 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:36:41 has no hits.
BS29956.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-18 15:28:26 Download gff for
BS29956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2991-RC | 318..2004 | 17..1703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:13 Download gff for
BS29956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2991-RB | 429..2115 | 17..1703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:47:42 Download gff for
BS29956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2991-RB | 429..2115 | 17..1703 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:47:42 Download gff for
BS29956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2864984..2865418 | 17..451 | 100 | -> | Plus |
| 2L | 2865482..2865577 | 452..547 | 100 | -> | Plus |
| 2L | 2866332..2866741 | 548..957 | 100 | -> | Plus |
| 2L | 2866814..2867230 | 958..1374 | 100 | -> | Plus |
| 2L | 2867337..2867665 | 1375..1703 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:13 Download gff for
BS29956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2864984..2865418 | 17..451 | 100 | -> | Plus |
| arm_2L | 2865482..2865577 | 452..547 | 100 | -> | Plus |
| arm_2L | 2866332..2866741 | 548..957 | 100 | -> | Plus |
| arm_2L | 2866814..2867230 | 958..1374 | 100 | -> | Plus |
| arm_2L | 2867337..2867665 | 1375..1703 | 100 | | Plus |
BS29956.pep Sequence
Translation from 16 to 1704
> BS29956.pep
MLPSLDTLMRCSKRVLQSPLEAAASQMRNGHSKSAAGGIYGPFTPDNDLS
CSGRGDCVNNTCVCDIRYAGNECDIFNLPYYAGISTVFYVVALVSVIQLL
ICIVAEYQRLKQPSVLRACRITTQKLLYFMVFVAASLRGAYFTTPLDLQP
QWAVTLMSAYYPLLMTCASLIVCMWAEIFHLRDIRWEKSQFLSKSFLGFV
AFNFFLYSLFGIEVFNSLINAERRDYAHIFNGCYAVLLLIVVVFFLIYGV
EVFFKLRGGFVYDQTGKILGPSEAIVNASQLHQSRFGLLFQAVMLIVIVG
FLTSETLGDFWKTKVPVNSRNWHDIIFRIAEIGVALWFPCCLWNSMAPEQ
LWILNPRKLLSRQIDPSIPTLNAETNKLSPEEGQSFLTKKDCWICYDSDK
PEPLIQPCRCTGDVSSVHHECLKRWLVESCSNSEAQLSCKVCGHPYEIEK
SKKLEWDKGFTIQHWSKTVILITLMCVTGATAWVVIQMYVDPLVRVMTVG
IAVLIGYVCVKCLGENTVVAYQRAKVSSINIVTSSEMEKLHTICEEVSAS
TSAEAVRAGAAS*
BS29956.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2991-PC | 562 | CG2991-PC | 1..562 | 1..562 | 2965 | 100 | Plus |
| CG2991-PA | 562 | CG2991-PA | 1..562 | 1..562 | 2965 | 100 | Plus |
| CG2991-PB | 562 | CG2991-PB | 1..562 | 1..562 | 2965 | 100 | Plus |
